Literature DB >> 28762403

Catalysis by solvation rather than the desolvation effect: exploring the catalytic efficiency of SAM-dependent chlorinase.

Edson Araújo1, Anderson H Lima, Jerônimo Lameira.   

Abstract

Chlorinase SalL halogenate S-adenosyl-l-methionine (SAM) reacts with chloride to generate 5'-chloro-5'-deoxyadenosine and l-methionine through a nucleophilic substitution mechanism. Although it is known that chlorinase enhances the rate of reaction by a factor of 1.2 × 1017 fold, it is not entirely clear how this is accomplished. The search for the origin of the catalysis of chlorinase and other enzymes has led to a desolvation hypothesis. In the present work, we have used well defined computational simulations in order to evaluate the origin of the catalytic efficiency of chlorinase. The results demonstrate that the catalytic effect of chlorinase is associated with the fact that Cl- is "solvated" by the protein more than by the reference solution reaction, which is not in accordance with proposed catalysis by desolvation. It is found that chlorinase SalL active sites provide electrostatic stabilization of the transition state which is the origin of its catalytic effect.

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Year:  2017        PMID: 28762403     DOI: 10.1039/c7cp02811c

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  4 in total

1.  QM/MM Study of the Fosfomycin Resistance Mechanism Involving FosB Enzyme.

Authors:  Anderson H Lima; José Rogério A Silva; Cláudio Nahum Alves; Jerônimo Lameira
Journal:  ACS Omega       Date:  2021-05-03

2.  Exploring the Catalytic Mechanism of the RNA Cap Modification by nsp16-nsp10 Complex of SARS-CoV-2 through a QM/MM Approach.

Authors:  José Rogério A Silva; Jaime Urban; Edson Araújo; Jerônimo Lameira; Vicent Moliner; Cláudio Nahum Alves
Journal:  Int J Mol Sci       Date:  2021-12-28       Impact factor: 5.923

3.  A Computational Study of the Promiscuity of the SAM-Dependent Methyltransferase AtHTMT1.

Authors:  Timm Lankau; Hao Chun Ken; Hsiang Ming Chang; Chin Hui Yu
Journal:  ACS Omega       Date:  2022-04-06

4.  Exploring the Potentiality of Natural Products from Essential Oils as Inhibitors of Odorant-Binding Proteins: A Structure- and Ligand-Based Virtual Screening Approach To Find Novel Mosquito Repellents.

Authors:  Kauȇ Santana da Costa; João Marcos Galúcio; Clauber Henrique Souza da Costa; Amanda Ruslana Santana; Vitor Dos Santos Carvalho; Lidiane Diniz do Nascimento; Anderson Henrique Lima E Lima; Jorddy Neves Cruz; Claudio Nahum Alves; Jerônimo Lameira
Journal:  ACS Omega       Date:  2019-12-17
  4 in total

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