Literature DB >> 28762205

Next-generation AAV vectors for clinical use: an ever-accelerating race.

Jonas Weinmann1,2, Dirk Grimm3,4,5.   

Abstract

During the past five decades, it has become evident that Adeno-associated virus (AAV) represents one of the most potent, most versatile, and thus most auspicious platforms available for gene delivery into cells, animals and, ultimately, humans. Particularly attractive is the ease with which the viral capsid-the major determinant of virus-host interaction including cell specificity and antibody recognition-can be modified and optimized at will. This has motivated countless researchers to develop high-throughput technologies in which genetically engineered AAV capsid libraries are subjected to a vastly hastened emulation of natural evolution, with the aim to enrich novel synthetic AAV capsids displaying superior features for clinical application. While the power and potential of these forward genetics approaches is undisputed, they are also inherently challenging as success depends on a combination of library quality, fidelity, and complexity. Here, we will describe and discuss two original, very exciting strategies that have emerged over the last three years and that promise to alleviate at least some of these concerns, namely, (i) a reverse genetics approach termed "ancestral AAV sequence reconstruction," and (ii) AAV genome barcoding as a technology that can advance both, forward and reverse genetics stratagems. Notably, despite the conceptual differences of these two technologies, they pursue the same goal which is tailored acceleration of AAV evolution and thus winning the race for the next-generation AAV vectors for clinical use.

Entities:  

Keywords:  AAV, Adeno-associated virus(es); Ancestral sequence reconstruction; Capsid selection; DNA barcoding; Gene therapy; High-throughput; Molecular evolution; Viral vector(s)

Mesh:

Substances:

Year:  2017        PMID: 28762205     DOI: 10.1007/s11262-017-1502-7

Source DB:  PubMed          Journal:  Virus Genes        ISSN: 0920-8569            Impact factor:   2.332


  42 in total

Review 1.  Directed evolution of novel adeno-associated viruses for therapeutic gene delivery.

Authors:  M A Bartel; J R Weinstein; D V Schaffer
Journal:  Gene Ther       Date:  2012-03-08       Impact factor: 5.250

2.  Enhancing the utility of adeno-associated virus gene transfer through inducible tissue-specific expression.

Authors:  Shu-Jen Chen; Julie Johnston; Arbans Sandhu; Lawrence T Bish; Ruben Hovhannisyan; Odella Jno-Charles; H Lee Sweeney; James M Wilson
Journal:  Hum Gene Ther Methods       Date:  2013-08       Impact factor: 2.396

3.  microRNA122-regulated transgene expression increases specificity of cardiac gene transfer upon intravenous delivery of AAV9 vectors.

Authors:  A Geisler; A Jungmann; J Kurreck; W Poller; H A Katus; R Vetter; H Fechner; O J Müller
Journal:  Gene Ther       Date:  2010-11-04       Impact factor: 5.250

4.  In vivo genome editing of the albumin locus as a platform for protein replacement therapy.

Authors:  Rajiv Sharma; Xavier M Anguela; Yannick Doyon; Thomas Wechsler; Russell C DeKelver; Scott Sproul; David E Paschon; Jeffrey C Miller; Robert J Davidson; David Shivak; Shangzhen Zhou; Julianne Rieders; Philip D Gregory; Michael C Holmes; Edward J Rebar; Katherine A High
Journal:  Blood       Date:  2015-08-21       Impact factor: 22.113

5.  Adeno-associated Virus (AAV) Assembly-Activating Protein Is Not an Essential Requirement for Capsid Assembly of AAV Serotypes 4, 5, and 11.

Authors:  Lauriel F Earley; John M Powers; Kei Adachi; Joshua T Baumgart; Nancy L Meyer; Qing Xie; Michael S Chapman; Hiroyuki Nakai
Journal:  J Virol       Date:  2017-01-18       Impact factor: 5.103

6.  In Silico Reconstruction of the Viral Evolutionary Lineage Yields a Potent Gene Therapy Vector.

Authors:  Eric Zinn; Simon Pacouret; Vadim Khaychuk; Heikki T Turunen; Livia S Carvalho; Eva Andres-Mateos; Samiksha Shah; Rajani Shelke; Anna C Maurer; Eva Plovie; Ru Xiao; Luk H Vandenberghe
Journal:  Cell Rep       Date:  2015-07-30       Impact factor: 9.423

7.  DNA shuffling of adeno-associated virus yields functionally diverse viral progeny.

Authors:  James T Koerber; Jae-Hyung Jang; David V Schaffer
Journal:  Mol Ther       Date:  2008-08-26       Impact factor: 11.454

8.  Long-term, efficient inhibition of microRNA function in mice using rAAV vectors.

Authors:  Jun Xie; Stefan L Ameres; Randall Friedline; Jui-Hung Hung; Yu Zhang; Qing Xie; Li Zhong; Qin Su; Ran He; Mengxin Li; Huapeng Li; Xin Mu; Hongwei Zhang; Jennifer A Broderick; Jason K Kim; Zhiping Weng; Terence R Flotte; Phillip D Zamore; Guangping Gao
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

9.  Promoterless gene targeting without nucleases ameliorates haemophilia B in mice.

Authors:  A Barzel; N K Paulk; Y Shi; Y Huang; K Chu; F Zhang; P N Valdmanis; L P Spector; M H Porteus; K M Gaensler; M A Kay
Journal:  Nature       Date:  2014-10-29       Impact factor: 49.962

Review 10.  Improving clinical efficacy of adeno associated vectors by rational capsid bioengineering.

Authors:  Dwaipayan Sen
Journal:  J Biomed Sci       Date:  2014-11-26       Impact factor: 8.410

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  13 in total

1.  From Virus to vector to medicine: Foreword by guest editors.

Authors:  Florian Kreppel; Anja Ehrhardt
Journal:  Virus Genes       Date:  2017-10       Impact factor: 2.332

2.  Pre-arrayed Pan-AAV Peptide Display Libraries for Rapid Single-Round Screening.

Authors:  Kathleen Börner; Eike Kienle; Lin-Ya Huang; Jonas Weinmann; Anna Sacher; Philipp Bayer; Christian Stüllein; Julia Fakhiri; Laura Zimmermann; Adrian Westhaus; Jürgen Beneke; Nina Beil; Ellen Wiedtke; Carolin Schmelas; Dominik Miltner; Alexander Rau; Holger Erfle; Hans-Georg Kräusslich; Martin Müller; Mavis Agbandje-McKenna; Dirk Grimm
Journal:  Mol Ther       Date:  2020-02-13       Impact factor: 11.454

Review 3.  Next Generation of Adeno-Associated Virus Vectors for Gene Therapy for Human Liver Diseases.

Authors:  Kenneth I Berns; Arun Srivastava
Journal:  Gastroenterol Clin North Am       Date:  2019-04-01       Impact factor: 3.806

Review 4.  Evaluating the state of the science for adeno-associated virus integration: An integrated perspective.

Authors:  Denise E Sabatino; Frederic D Bushman; Randy J Chandler; Ronald G Crystal; Beverly L Davidson; Ricardo Dolmetsch; Kevin C Eggan; Guangping Gao; Irene Gil-Farina; Mark A Kay; Douglas M McCarty; Eugenio Montini; Adora Ndu; Jing Yuan
Journal:  Mol Ther       Date:  2022-06-10       Impact factor: 12.910

5.  Changing trends in the development of AAV-based gene therapies: a meta-analysis of past and present therapies.

Authors:  Tamara Burdett; Samir Nuseibeh
Journal:  Gene Ther       Date:  2022-09-12       Impact factor: 4.184

Review 6.  Best of most possible worlds: Hybrid gene therapy vectors based on parvoviruses and heterologous viruses.

Authors:  Julia Fakhiri; Dirk Grimm
Journal:  Mol Ther       Date:  2021-04-05       Impact factor: 11.454

Review 7.  Emerging Issues in AAV-Mediated In Vivo Gene Therapy.

Authors:  Pasqualina Colella; Giuseppe Ronzitti; Federico Mingozzi
Journal:  Mol Ther Methods Clin Dev       Date:  2017-12-01       Impact factor: 6.698

8.  Cell-specific CRISPR-Cas9 activation by microRNA-dependent expression of anti-CRISPR proteins.

Authors:  Mareike D Hoffmann; Sabine Aschenbrenner; Stefanie Grosse; Kleopatra Rapti; Claire Domenger; Julia Fakhiri; Manuel Mastel; Kathleen Börner; Roland Eils; Dirk Grimm; Dominik Niopek
Journal:  Nucleic Acids Res       Date:  2019-07-26       Impact factor: 16.971

Review 9.  RNA Dysregulation in Amyotrophic Lateral Sclerosis.

Authors:  Zoe Butti; Shunmoogum A Patten
Journal:  Front Genet       Date:  2019-01-22       Impact factor: 4.599

10.  Feasibility of using NF1-GRD and AAV for gene replacement therapy in NF1-associated tumors.

Authors:  Ren-Yuan Bai; Dominic Esposito; Ada J Tam; Frank McCormick; Gregory J Riggins; D Wade Clapp; Verena Staedtke
Journal:  Gene Ther       Date:  2019-05-24       Impact factor: 5.250

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