Literature DB >> 28762098

Preprocessing Prediction of Advanced Algorithms for Medical Imaging.

Bella Fadida-Specktor1.   

Abstract

Advanced medical imaging algorithms (such as bone removal, vessel segmentation, or a lung nodule detection) can provide extremely valuable information to the radiologists, but they might sometimes be very time consuming. Being able to run the algorithms in advance can be a possible solution. However, we do not know which algorithm to run on a given dataset before it is actually used. It is possible to manually insert matching rules for preprocessing algorithms, but it requires high maintenance and does not work well in practice. This paper presents a dynamic machine learning solution for predicting which advanced visualization (AV) algorithm needs to be applied on a given series. The system gets a handful of free text DICOM tags as an input and builds a model in the clinical setting. It incorporates a Bag of Words (BOW) feature extractor and a Random Forest classifier. The approach was tested on two datasets from clinical sites which use different languages and varying scanner models. We show that even without feature extraction, sensitivity of above 90% can be reached on both of them. By using BOW feature extractor, precision and sensitivity can usually be further improved. Even on a noisy and highly unbalanced dataset, only around 100 samples were needed to reach sensitivity of above 80% and specificity of above 97%. We show how the solution can be part of a Smart Preprocessing mechanism in a viewing software. Using such a system will ultimately minimize the time to launch studies and improve radiologists reading time efficiency.

Keywords:  Advanced visualization algorithms; Bag of words; DICOM; Machine learning; Preprocessing; Random forest

Mesh:

Year:  2018        PMID: 28762098      PMCID: PMC5788832          DOI: 10.1007/s10278-017-9999-9

Source DB:  PubMed          Journal:  J Digit Imaging        ISSN: 0897-1889            Impact factor:   4.056


  6 in total

1.  Disease specific intelligent pre-fetch and hanging protocol for diagnostic neuroradiology workstations.

Authors:  C A Morioka; D J Valentino; G Duckwiler; S El-Saden; U Sinha; A Bui; H Kangarloo
Journal:  Proc AMIA Symp       Date:  2001

2.  Pattern recognition for cache management in distributed medical imaging environments.

Authors:  Carlos Viana-Ferreira; Luís Ribeiro; Sérgio Matos; Carlos Costa
Journal:  Int J Comput Assist Radiol Surg       Date:  2015-08-05       Impact factor: 2.924

3.  Problem-oriented prefetching for an integrated clinical imaging workstation.

Authors:  A A Bui; M F McNitt-Gray; J G Goldin; A F Cardenas; D R Aberle
Journal:  J Am Med Inform Assoc       Date:  2001 May-Jun       Impact factor: 4.497

4.  Workload of radiologists in United States in 2006-2007 and trends since 1991-1992.

Authors:  Mythreyi Bhargavan; Adam H Kaye; Howard P Forman; Jonathan H Sunshine
Journal:  Radiology       Date:  2009-06-09       Impact factor: 11.105

5.  Determining scanned body part from DICOM study description for relevant prior study matching.

Authors:  Thusitha Mabotuwana; Yuechen Qian
Journal:  Stud Health Technol Inform       Date:  2013

6.  Gene selection and classification of microarray data using random forest.

Authors:  Ramón Díaz-Uriarte; Sara Alvarez de Andrés
Journal:  BMC Bioinformatics       Date:  2006-01-06       Impact factor: 3.169

  6 in total

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