Literature DB >> 28759232

Effect of Concentration on the Supramolecular Polymerization Mechanism via Implicit-Solvent Coarse-Grained Simulations of Water-Soluble 1,3,5-Benzenetricarboxamide.

Davide Bochicchio1, Giovanni M Pavan1.   

Abstract

We report an implicit-solvent coarse-grained (CG) model for a water-soluble 1,3,5-benzenetricarboxamide (BTA) supramolecular polymer. The technical advances guaranteed by this CG model allow simulation of the self-assembly of 1000 BTA monomers and easy variation of the BTA concentration into the system down to experimental dilute conditions. In this way, we can monitor the mechanism of supramolecular polymerization as a function of the concentration at submolecular resolution exceeding the microsecond time scale. While increasing the concentration produces rapid formation of large disordered clusters that are then converted into BTA fibers, moving to very dilute concentrations favors early ordering of the oligomers in solution even at small sizes. Interestingly, we observe that below a certain concentration the oligomers that dynamically grow in solution during the self-assembly present the same level (and amplification) of order of prestacked equilibrated oligomers of the same size, meaning that concentration-dependent kinetic effects have disappeared from the polymerization mechanism.

Entities:  

Year:  2017        PMID: 28759232     DOI: 10.1021/acs.jpclett.7b01649

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  5 in total

Review 1.  Molecular Modeling for Nanomaterial-Biology Interactions: Opportunities, Challenges, and Perspectives.

Authors:  Tommaso Casalini; Vittorio Limongelli; Mélanie Schmutz; Claudia Som; Olivier Jordan; Peter Wick; Gerrit Borchard; Giuseppe Perale
Journal:  Front Bioeng Biotechnol       Date:  2019-10-17

2.  Martini Coarse-Grained Model of Hyaluronic Acid for the Structural Change of Its Gel in the Presence of Monovalent and Divalent Salts.

Authors:  Raj Kumar; Young Kyu Lee; Yong Seok Jho
Journal:  Int J Mol Sci       Date:  2020-06-29       Impact factor: 5.923

3.  How the Choice of Force-Field Affects the Stability and Self-Assembly Process of Supramolecular CTA Fibers.

Authors:  Tomasz K Piskorz; A H de Vries; Jan H van Esch
Journal:  J Chem Theory Comput       Date:  2021-11-23       Impact factor: 6.006

4.  Molecular communications in complex systems of dynamic supramolecular polymers.

Authors:  Martina Crippa; Claudio Perego; Anna L de Marco; Giovanni M Pavan
Journal:  Nat Commun       Date:  2022-04-20       Impact factor: 17.694

Review 5.  Molecular modelling of supramolecular one dimensional polymers.

Authors:  Divya B Korlepara; S Balasubramanian
Journal:  RSC Adv       Date:  2018-06-20       Impact factor: 3.361

  5 in total

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