Literature DB >> 28758167

Joint Data Harmonization and Group Cardinality Constrained Classification.

Yong Zhang1, Sang Hyun Park2, Kilian M Pohl1,2.   

Abstract

To boost the power of classifiers, studies often increase the size of existing samples through the addition of independently collected data sets. Doing so requires harmonizing the data for demographic and acquisition differences based on a control cohort before performing disease specific classification. The initial harmonization often mitigates group differences negatively impacting classification accuracy. To preserve cohort separation, we propose the first model unifying linear regression for data harmonization with a logistic regression for disease classification. Learning to harmonize data is now an adaptive process taking both disease and control data into account. Solutions within that model are confined by group cardinality to reduce the risk of overfitting (via sparsity), to explicitly account for the impact of disease on the inter-dependency of regions (by grouping them), and to identify disease specific patterns (by enforcing sparsity via the l0-'norm'). We test those solutions in distinguishing HIV-Associated Neurocognitive Disorder from Mild Cognitive Impairment of two independently collected, neuroimage data sets; each contains controls and samples from one disease. Our classifier is impartial to acquisition difference between the data sets while being more accurate in diseases seperation than sequential learning of harmonization and classification parameters, and non-sparsity based logistic regressors.

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Mesh:

Year:  2016        PMID: 28758167      PMCID: PMC5530376          DOI: 10.1007/978-3-319-46720-7_33

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  10 in total

1.  Impact of apolipoprotein E ε4 and HIV on cognition and brain atrophy: antagonistic pleiotropy and premature brain aging.

Authors:  L Chang; M Andres; J Sadino; C S Jiang; H Nakama; E Miller; T Ernst
Journal:  Neuroimage       Date:  2011-07-21       Impact factor: 6.556

2.  A universal and efficient method to compute maps from image-based prediction models.

Authors:  Mert R Sabuncu
Journal:  Med Image Comput Comput Assist Interv       Date:  2014

3.  Multisite longitudinal reliability of tract-based spatial statistics in diffusion tensor imaging of healthy elderly subjects.

Authors:  Jorge Jovicich; Moira Marizzoni; Beatriz Bosch; David Bartrés-Faz; Jennifer Arnold; Jens Benninghoff; Jens Wiltfang; Luca Roccatagliata; Agnese Picco; Flavio Nobili; Oliver Blin; Stephanie Bombois; Renaud Lopes; Régis Bordet; Valérie Chanoine; Jean-Philippe Ranjeva; Mira Didic; Hélène Gros-Dagnac; Pierre Payoux; Giada Zoccatelli; Franco Alessandrini; Alberto Beltramello; Núria Bargalló; Antonio Ferretti; Massimo Caulo; Marco Aiello; Monica Ragucci; Andrea Soricelli; Nicola Salvadori; Roberto Tarducci; Piero Floridi; Magda Tsolaki; Manos Constantinidis; Antonios Drevelegas; Paolo Maria Rossini; Camillo Marra; Josephin Otto; Martin Reiss-Zimmermann; Karl-Titus Hoffmann; Samantha Galluzzi; Giovanni B Frisoni
Journal:  Neuroimage       Date:  2014-07-12       Impact factor: 6.556

4.  3D mapping of ventricular and corpus callosum abnormalities in HIV/AIDS.

Authors:  Paul M Thompson; Rebecca A Dutton; Kiralee M Hayashi; Allen Lu; Sharon E Lee; Jessica Y Lee; Oscar L Lopez; Howard J Aizenstein; Arthur W Toga; James T Becker
Journal:  Neuroimage       Date:  2006-01-19       Impact factor: 6.556

5.  Predicting symptom severity in autism spectrum disorder based on cortical thickness measures in agglomerative data.

Authors:  Elaheh Moradi; Budhachandra Khundrakpam; John D Lewis; Alan C Evans; Jussi Tohka
Journal:  Neuroimage       Date:  2016-09-22       Impact factor: 6.556

6.  Ventricular enlargement as a possible measure of Alzheimer's disease progression validated using the Alzheimer's disease neuroimaging initiative database.

Authors:  Sean M Nestor; Raul Rupsingh; Michael Borrie; Matthew Smith; Vittorio Accomazzi; Jennie L Wells; Jennifer Fogarty; Robert Bartha
Journal:  Brain       Date:  2008-07-11       Impact factor: 13.501

7.  Variation in longitudinal trajectories of regional brain volumes of healthy men and women (ages 10 to 85 years) measured with atlas-based parcellation of MRI.

Authors:  Adolf Pfefferbaum; Torsten Rohlfing; Margaret J Rosenbloom; Weiwei Chu; Ian M Colrain; Edith V Sullivan
Journal:  Neuroimage       Date:  2012-10-12       Impact factor: 6.556

8.  Mapping white matter integrity in elderly people with HIV.

Authors:  Talia M Nir; Neda Jahanshad; Edgar Busovaca; Lauren Wendelken; Krista Nicolas; Paul M Thompson; Victor G Valcour
Journal:  Hum Brain Mapp       Date:  2013-01-30       Impact factor: 5.038

9.  Computing group cardinality constraint solutions for logistic regression problems.

Authors:  Yong Zhang; Dongjin Kwon; Kilian M Pohl
Journal:  Med Image Anal       Date:  2016-06-11       Impact factor: 8.545

Review 10.  HIV-associated neurocognitive disorders.

Authors:  Montserrat Sanmarti; Laura Ibáñez; Sonia Huertas; Dolors Badenes; David Dalmau; Mark Slevin; Jerzy Krupinski; Aurel Popa-Wagner; Angeles Jaen
Journal:  J Mol Psychiatry       Date:  2014-03-04
  10 in total
  2 in total

1.  An anatomically curated fiber clustering white matter atlas for consistent white matter tract parcellation across the lifespan.

Authors:  Fan Zhang; Ye Wu; Isaiah Norton; Laura Rigolo; Yogesh Rathi; Nikos Makris; Lauren J O'Donnell
Journal:  Neuroimage       Date:  2018-06-18       Impact factor: 6.556

2.  Alcohol use effects on adolescent brain development revealed by simultaneously removing confounding factors, identifying morphometric patterns, and classifying individuals.

Authors:  Sang Hyun Park; Yong Zhang; Dongjin Kwon; Qingyu Zhao; Natalie M Zahr; Adolf Pfefferbaum; Edith V Sullivan; Kilian M Pohl
Journal:  Sci Rep       Date:  2018-05-29       Impact factor: 4.379

  2 in total

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