| Literature DB >> 28757710 |
Yaw-Tsan Ho1, Semon Wu2,3, Ching-Feng Cheng4,5, Lung-An Hsu6, Ming-Sheng Teng2, Ching-Hua Yeh7, Jeng Feng Lin7, Yu-Lin Ko2,5,7.
Abstract
OBJECTIVES: The TBX5 gene, a member of the T-box family, is associated with congenital heart disease, electrocardiographic parameters, and development of atrial fibrillation in the general population. This study aimed to elucidate the role of TBX5 gene polymorphisms in metabolic and inflammatory profiles possibly linked to TBX5-related pathologies.Entities:
Keywords: Gene association study; Haplotype; Interaction; Matrix metalloproteinase 9; TBX5 gene
Year: 2015 PMID: 28757710 PMCID: PMC5509168 DOI: 10.1016/j.tcmj.2015.09.005
Source DB: PubMed Journal: Ci Ji Yi Xue Za Zhi
Clinical and biochemical characteristics of the study participants stratified by gender.
| Total | Men | Women | ||
|---|---|---|---|---|
| No. | 597 | 314 | 283 | |
| Age (y) | 45.5 ± 10.1 | 44.6 ± 10.1 | 46.5 ± 9.9 | 0.018 |
| Body mass index (kg/m2) | 24.3 ± 3.5 | 25.0 ± 3.2 | 23.6 ± 3.7 | <0.001 |
| Current smoker (%) | 19.4 | 33.4 | 3.9 | <0.001 |
| CRP (mg/L) | 1.6 ± 6.1 | 1.9 ± 7.9 | 1.4 ± 3.1 | 0.065 |
| Fibrinogen (μmol/L) | 264.0 ± 69.6 | 261.8 ± 71.5 | 266.4 ± 67.5 | 0.414 |
| SELE (μg/L) | 53.5 ± 26.6 | 60.7 ± 28.4 | 45.5 ± 21.9 | <0.001 |
| SELP (ng/mL) | 140.3 ± 116.9 | 155.4 ± 131.6 | 123.6 ± 95.7 | <0.001 |
| SAA (μmol/L) | 6.2 ± 15.6 | 7.2 ± 19.8 | 5.1 ± 9.0 | 0.240 |
| sICAM1 (μg/L) | 241.8 ± 112.3 | 245.5 ± 111.9 | 237.5 ± 112.8 | 0.435 |
| sVCAM1 (μg/L) | 491.5 ± 132.4 | 495.8 ± 149.9 | 486.8 ± 109.9 | 0.504 |
| MMP1 (pg/mL) | 459.4 ± 1136.2 | 338.3 ± 549.8 | 593.3 ± 1534.7 | 0.747 |
| MMP2 (ng/mL) | 126.8 ± 41.0 | 123.7 ± 41.6 | 130.2 ± 40.0 | 0.016 |
| MMP9 (ng/mL) | 144.0 ± 112.45 | 155.8 ± 116.3 | 130.8 ± 106.7 | <0.001 |
| sTNFRII (pg/mL) | 3269.3 ± 948.3 | 3338.9 ± 996.8 | 3192.2 ± 887.0 | 0.061 |
Continuous variables are presented as mean ± standard deviation. SAA, CRP, sICAM1, sVCAM1, SELE, SELP, MMP1, and MMP9 values were transformed logarithmically before statistical testing to meet the assumption of normal distributions; however, untransformed data are shown.
CRP= C-reactive protein; MMP = matrix metalloproteinase; SAA = serum amyloid A; SD = standard deviation; SELE = soluble E-selectin; SELP = soluble P-selectin; sICAM1 = soluble intercellular adhesive molecule 1; sVCAM1 = soluble vascular cell adhesive molecule 1; sTNFRII = soluble tumor necrosis factor receptor II.
Primer sequences and RE used in TBX5 polymorphisms.
| SNP No. | Primer sequence | PCR size and RE | Allele | Location | Hardy—Weinberg |
|---|---|---|---|---|---|
| rs11067101 | TaqMan SNP genotyping assays | A/G | Intron 1 | 1 | |
| rs2236017 | TaqMan SNP genotyping assays | T/G | Intron 6 | 0.743 | |
| rs1247973 | (F)5’-TATACCTTCCAGCATAACTCGG-3’ | 316 bp | C/T | Intron 7 | 0.989 |
| (R)5’-TTGACACATATTAGGGGGACAC-3’ | Nal III | ||||
| rs4113925 | (F)5’-CACTCCAGCCTGGGCAACAAGA-3’ | 271 bp | A/G | Intron 7 | 0.895 |
| (R)5’-GCAAGTCAAACCTGGCATCTGGC-3’ | Sal I | ||||
| rs3825214 | (F)5’-ATTTGAATCAGGCTCCTTTACTTAATAT-3’ | 227 bp | A/G | Intron 8 | 0.917 |
| (R)5’-TATTATTGTGAATTATGTCTGCCATAAG-3 | Hind III |
PCR = polymerase chain reaction; RE = restriction enzyme; SNP = single nucleotide polymorphism.
Linkage disequilibrium between TBX5 genetic polymorphisms.a
| rs2236017 | rs1247973 | rs4113925 | rs3825214 | |
|---|---|---|---|---|
| rs11067101 | 0.056170 | 0.19214 | 0.005501 | 0.004083 |
| rs2236017 | — | 0.905577 | 0.421236 | 0.407054 |
| rs1247973 | — | — | 0.019257 | 0.050587 |
| rs4113925 | — | — | — | 0.798946 |
a The values represent D’.
Associations between TBX5 genotypes and MMP9 levels.
| MMP9 levels | |||
|---|---|---|---|
| rs11067101 | AA | 143.79 ± 117.19(112) | 0.255 |
| AG | 137.21 ± 110.52 (283) | ||
| GG | 155.93 ± 114.72 (176) | ||
| AA + AG | 139.08 ± 112.34(395) | 0.073 | |
| GG | 155.93 ± 114.72 (176) | ||
| rs2236017 | TT | 155.69 ± 128.78 (54) | 0.728 |
| TG | 140.87 ± 116.82 (257) | ||
| GG | 147.69 ± 107.70 (249) | ||
| TT + TG | 143.45 ± 118.90(311) | 0.376 | |
| GG | 147.69 ± 107.70 (249) | ||
| rs1247973 | CC | 161.14± 141.38 (130) | 0.204 |
| CT | 138.10 ± 98.91 (286) | ||
| TT | 141.49 ± 110.44(156) | ||
| CC + CT | 145.30 ± 114.22 (416) | 0.846 | |
| TT | 141.49 ± 110.44(156) | ||
| rs4113925 | AA | 124.02 ± 96.12 (175) | 0.013 |
| AG | 153.55 ± 119.56 (276) | ||
| GG | 152.36 ± 117.79(121) | ||
| AA | 124.02 ± 96.12 (175) | 0.002 | |
| AG + GG | 153.18 ± 118.87 (397) | ||
| rs3825214 | GG | 147.61 ± 101.70 (94) | 0.019 |
| GA | 159.35± 129.01 (266) | ||
| AA | 124.61 ± 92.38 (209) | ||
| GG + GA | 156.28 ± 122.44 (360) | 0.001 | |
| AA | 124.61 ± 92.38 (209) |
Data are presented as mean ± standard deviation (N).
MMP9 = matrix metalloproteinase 9; N = number of subjects; SD = standard deviation.
a The p value is adjusted for age, sex, body mass index, and smoking status.
Associations between TBX5 locus haplotypes and MMP9 levels.a
| Haplotype | Frequency (%) | MMP9 level | |||
|---|---|---|---|---|---|
| Coefficient | |||||
| H1 | GCA | 19.3 | –0.0970 | 0.4078 | 0.6493 |
| H2 | ATA | 17.9 | –0.0291 | 0.0184 | 0.0720 |
| H3 | GTA | 14.3 | 0.0145 | 0.7880 | 0.8589 |
| H4 | GCG | 11.5 | –0.0669 | 0.0093 | 0.0435 |
| H5 | GTG | 10.8 | –0.2063 | 0.1882 | 0.4298 |
| H6 | ATG | 9.3 | 0.0495 | 0.7609 | 0.8447 |
| H7 | ACA | 8.5 | 0.0575 | 0.6541 | 0.8244 |
| H8 | ACG | 8.4 | 0.0886 | 0.1816 | 0.4395 |
MMP9 = matrix metalloproteinase 9; p1 = uncorrected p value; p2 = corrected false discovery rate p value; SNP = single nucleotide polymorphisms.
a SNP1, rs11067101; SNP2, rs1247973; SNP3, rs3825214. Coefficients and p values were estimated based on haplotype trend regression analysis implemented in the HelixTree program. The selected haplotype was compared to all unselected haplotypes, adjusted for age, sex, smoking, and body mass index.
MMP9 levels: stepwise linear regression analysis, including genotype.
| Variable | Beta | ||
|---|---|---|---|
| Gender | -0.051 | 0.022 | 0.022 |
| Age | -0.003 | 0.001 | 0.001 |
| BMI | <0.001 | 0.003 | 0.939 |
| Current smoker | 0.087 | 0.028 | 0.002 |
| Fibrinogen | 0.001 | <0.001 | <0.001 |
| Glucose | 0.001 | <0.001 | 0.056 |
| -0.155 | 0.044 | <0.001 | |
| 0.161 | 0.082 | 0.049 | |
| -0.061 | 0.021 | 0.004 |
BMI = body mass index; MMP9 = matrix metalloproteinase 9; SELE = soluble E-selectin.
a Cumulative R2. Multiple linear regression, adjusted for age, gender, smoking status, BMI, fibrinogen, fasting plasma glucose, SELE rs5368 genotype, MMP9 rs2274756 genotype, and TBX5 rs3825214 genotype.
Fig. 1Interactive effect of MMP9 levels on the association between TBX5 genotypes and obesity status. (A) After adjusting for clinical covariates, the major allele of rs4113925 of the TBX5 gene was found to be associated with decreased MMP9 levels in nonobese individuals (p = 1.04 × 10−4). Interaction analysis revealed an interaction between obesity status and the rs4113925 genotype (interaction p = 0.0088 for the dominant model, after adjustment for age, gender, and smoking status). (B) After adjusting for clinical covariates, the major allele of rs3825214 of the TBX5 gene was found to be associated with decreased MMP9 levels in nonobese individuals (p = 7.11 × 10−5). Interaction analysis revealed an interaction between obesity status and the rs4113925 genotype (interaction p = 0.0183 for the dominant model, after adjustment for age, gender, and smoking status). MMP9 = matrix metalloproteinase 9.