Literature DB >> 28757145

Structural Basis for Substrate Recognition by the Ankyrin Repeat Domain of Human DHHC17 Palmitoyltransferase.

Raffaello Verardi1, Jin-Sik Kim1, Rodolfo Ghirlando2, Anirban Banerjee3.   

Abstract

DHHC enzymes catalyze palmitoylation, a major post-translational modification that regulates a number of key cellular processes. There are up to 24 DHHCs in mammals and hundreds of substrate proteins that get palmitoylated. However, how DHHC enzymes engage with their substrates is still poorly understood. There is currently no structural information about the interaction between any DHHC enzyme and protein substrates. In this study we have investigated the structural and thermodynamic bases of interaction between the ankyrin repeat domain of human DHHC17 (ANK17) and Snap25b. We solved a high-resolution crystal structure of the complex between ANK17 and a peptide fragment of Snap25b. Through structure-guided mutagenesis, we discovered key residues in DHHC17 that are critically important for interaction with Snap25b. We further extended our finding by showing that the same residues are also crucial for the interaction of DHHC17 with Huntingtin, one of its most physiologically relevant substrates. Published by Elsevier Ltd.

Entities:  

Keywords:  DHHC; DHHC17; Huntingtin; Snap25b; X-ray crystallography; palmitoylation; palmitoyltransferase; posttranslational modification; protein lipidation; protein-protein interaction

Mesh:

Substances:

Year:  2017        PMID: 28757145      PMCID: PMC5599134          DOI: 10.1016/j.str.2017.06.018

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  45 in total

1.  SNAP-25 is targeted to the plasma membrane through a novel membrane-binding domain.

Authors:  S Gonzalo; W K Greentree; M E Linder
Journal:  J Biol Chem       Date:  1999-07-23       Impact factor: 5.157

2.  Integration and global analysis of isothermal titration calorimetry data for studying macromolecular interactions.

Authors:  Chad A Brautigam; Huaying Zhao; Carolyn Vargas; Sandro Keller; Peter Schuck
Journal:  Nat Protoc       Date:  2016-04-07       Impact factor: 13.491

Review 3.  Getting stuck in: protein palmitoylation in Plasmodium.

Authors:  Matthew L Jones; Chwen L Tay; Julian C Rayner
Journal:  Trends Parasitol       Date:  2012-09-23

4.  Recorded scan times can limit the accuracy of sedimentation coefficients in analytical ultracentrifugation.

Authors:  Huaying Zhao; Rodolfo Ghirlando; Grzegorz Piszczek; Ute Curth; Chad A Brautigam; Peter Schuck
Journal:  Anal Biochem       Date:  2013-02-28       Impact factor: 3.365

5.  DHHC protein S-acyltransferases use similar ping-pong kinetic mechanisms but display different acyl-CoA specificities.

Authors:  Benjamin C Jennings; Maurine E Linder
Journal:  J Biol Chem       Date:  2012-01-13       Impact factor: 5.157

6.  Palmitoylation of huntingtin by HIP14 is essential for its trafficking and function.

Authors:  Anat Yanai; Kun Huang; Rujun Kang; Roshni R Singaraja; Pamela Arstikaitis; Lu Gan; Paul C Orban; Asher Mullard; Catherine M Cowan; Lynn A Raymond; Renaldo C Drisdel; William N Green; Brinda Ravikumar; David C Rubinsztein; Alaa El-Husseini; Michael R Hayden
Journal:  Nat Neurosci       Date:  2006-05-14       Impact factor: 24.884

7.  An ab initio investigation of the interactions involving the aromatic group of the set of fluorinated N-(4-sulfamylbenzoyl)benzylamine inhibitors and human carbonic anhydrase II.

Authors:  Kevin E Riley; Guanglei Cui; Kenneth M Merz
Journal:  J Phys Chem B       Date:  2007-05-03       Impact factor: 2.991

8.  Nonradioactive analysis of dynamic protein palmitoylation.

Authors:  Brent R Martin
Journal:  Curr Protoc Protein Sci       Date:  2013-09-24

9.  Identification of a Ras palmitoyltransferase in Saccharomyces cerevisiae.

Authors:  Sandra Lobo; Wendy K Greentree; Maurine E Linder; Robert J Deschenes
Journal:  J Biol Chem       Date:  2002-08-21       Impact factor: 5.157

10.  Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega.

Authors:  Fabian Sievers; Andreas Wilm; David Dineen; Toby J Gibson; Kevin Karplus; Weizhong Li; Rodrigo Lopez; Hamish McWilliam; Michael Remmert; Johannes Söding; Julie D Thompson; Desmond G Higgins
Journal:  Mol Syst Biol       Date:  2011-10-11       Impact factor: 11.429

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  24 in total

Review 1.  Structure and Mechanism of DHHC Protein Acyltransferases.

Authors:  Robyn Stix; Chul-Jin Lee; José D Faraldo-Gómez; Anirban Banerjee
Journal:  J Mol Biol       Date:  2020-06-06       Impact factor: 5.469

2.  Protein Lipidation: Occurrence, Mechanisms, Biological Functions, and Enabling Technologies.

Authors:  Hong Jiang; Xiaoyu Zhang; Xiao Chen; Pornpun Aramsangtienchai; Zhen Tong; Hening Lin
Journal:  Chem Rev       Date:  2018-01-02       Impact factor: 60.622

Review 3.  Inhibitors of DHHC family proteins.

Authors:  Tong Lan; Clémence Delalande; Bryan C Dickinson
Journal:  Curr Opin Chem Biol       Date:  2021-08-28       Impact factor: 8.822

4.  An atlas of Arabidopsis protein S-acylation reveals its widespread role in plant cell organization and function.

Authors:  Manoj Kumar; Paul Carr; Simon R Turner
Journal:  Nat Plants       Date:  2022-06-09       Impact factor: 17.352

Review 5.  Protein Lipidation in Cell Signaling and Diseases: Function, Regulation, and Therapeutic Opportunities.

Authors:  Baoen Chen; Yang Sun; Jixiao Niu; Gopala K Jarugumilli; Xu Wu
Journal:  Cell Chem Biol       Date:  2018-05-31       Impact factor: 8.116

6.  Structural basis and regulation of the reductive stress response.

Authors:  Andrew G Manford; Elijah L Mena; Karen Y Shih; Christine L Gee; Rachael McMinimy; Brenda Martínez-González; Rumi Sherriff; Brandon Lew; Madeline Zoltek; Fernando Rodríguez-Pérez; Makda Woldesenbet; John Kuriyan; Michael Rape
Journal:  Cell       Date:  2021-09-24       Impact factor: 66.850

Review 7.  Palmitoylation as a Functional Regulator of Neurotransmitter Receptors.

Authors:  Vladimir S Naumenko; Evgeni Ponimaskin
Journal:  Neural Plast       Date:  2018-04-03       Impact factor: 3.599

8.  The linker domain of the SNARE protein SNAP25 acts as a flexible molecular spacer that ensures efficient S-acylation.

Authors:  Christine Salaun; Jennifer Greaves; Nicholas C O Tomkinson; Luke H Chamberlain
Journal:  J Biol Chem       Date:  2020-04-21       Impact factor: 5.157

9.  S-Acylation of Proteins of Coronavirus and Influenza Virus: Conservation of Acylation Sites in Animal Viruses and DHHC Acyltransferases in Their Animal Reservoirs.

Authors:  Dina A Abdulrahman; Xiaorong Meng; Michael Veit
Journal:  Pathogens       Date:  2021-05-29

10.  Peptide array-based screening reveals a large number of proteins interacting with the ankyrin-repeat domain of the zDHHC17 S-acyltransferase.

Authors:  Kimon Lemonidis; Ruth MacLeod; George S Baillie; Luke H Chamberlain
Journal:  J Biol Chem       Date:  2017-09-07       Impact factor: 5.157

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