Literature DB >> 28755976

G-Quadruplexes: Prediction, Characterization, and Biological Application.

Chun Kit Kwok1, Catherine J Merrick2.   

Abstract

Guanine (G)-rich sequences in nucleic acids can assemble into G-quadruplex structures that involve G-quartets linked by loop nucleotides. The structural and topological diversity of G-quadruplexes have attracted great attention for decades. Recent methodological advances have advanced the identification and characterization of G-quadruplexes in vivo as well as in vitro, and at a much higher resolution and throughput, which has greatly expanded our current understanding of G-quadruplex structure and function. Accumulating knowledge about the structural properties of G-quadruplexes has helped to design and develop a repertoire of molecular and chemical tools for biological applications. This review highlights how these exciting methods and findings have opened new doors to investigate the potential functions and applications of G-quadruplexes in basic and applied biosciences.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  G-quadruplex; aptamer; biosensing; cell imaging; next-generation sequencing; nucleic acid structure

Mesh:

Year:  2017        PMID: 28755976     DOI: 10.1016/j.tibtech.2017.06.012

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  71 in total

1.  G-Quadruplex DNA Motifs in the Malaria Parasite Plasmodium falciparum and Their Potential as Novel Antimalarial Drug Targets.

Authors:  Lynne M Harris; Katelyn R Monsell; Florian Noulin; M Toyin Famodimu; Nicolas Smargiasso; Christian Damblon; Paul Horrocks; Catherine J Merrick
Journal:  Antimicrob Agents Chemother       Date:  2018-02-23       Impact factor: 5.191

2.  FaptaSyme: A Strategy for Converting a Monomer/Oligomer-Nonselective Aptameric Sensor into an Oligomer-Selective One.

Authors:  Baggio A Evangelista; Yoon-Seong Kim; Dmitry M Kolpashchikov
Journal:  Chembiochem       Date:  2018-04-26       Impact factor: 3.164

3.  Selective discrimination and classification of G-quadruplex structures with a host-guest sensing array.

Authors:  Junyi Chen; Briana L Hickey; Linlin Wang; Jiwon Lee; Adam D Gill; Alessia Favero; Roberta Pinalli; Enrico Dalcanale; Richard J Hooley; Wenwan Zhong
Journal:  Nat Chem       Date:  2021-04-01       Impact factor: 24.427

4.  Comparison of protein capture from a human cancer cell line by genomic G-quadruplex DNA sequences toward aptamer discovery.

Authors:  Kathleen L Morrissey; Dylan DeWitt; Nikhil Shah; William Fall; Hari Shah; Linda B McGown
Journal:  Anal Bioanal Chem       Date:  2021-04-21       Impact factor: 4.142

Review 5.  Detecting RNA G-Quadruplexes (rG4s) in the Transcriptome.

Authors:  Chun Kit Kwok; Giovanni Marsico; Shankar Balasubramanian
Journal:  Cold Spring Harb Perspect Biol       Date:  2018-07-02       Impact factor: 10.005

Review 6.  On the wrong DNA track: Molecular mechanisms of repeat-mediated genome instability.

Authors:  Alexandra N Khristich; Sergei M Mirkin
Journal:  J Biol Chem       Date:  2020-02-14       Impact factor: 5.157

7.  Altering the Neisseria gonorrhoeae pilE Guanine Quadruplex Loop Bases Affects Pilin Antigenic Variation.

Authors:  Lauren L Prister; Shaohui Yin; Laty A Cahoon; H Steven Seifert
Journal:  Biochemistry       Date:  2020-02-27       Impact factor: 3.162

Review 8.  Cis- and Trans-Modifiers of Repeat Expansions: Blending Model Systems with Human Genetics.

Authors:  Ryan J McGinty; Sergei M Mirkin
Journal:  Trends Genet       Date:  2018-03-19       Impact factor: 11.639

Review 9.  Non-canonical DNA/RNA structures during Transcription-Coupled Double-Strand Break Repair: Roadblocks or Bona fide repair intermediates?

Authors:  Nadine Puget; Kyle M Miller; Gaëlle Legube
Journal:  DNA Repair (Amst)       Date:  2019-07-08

Review 10.  Modulation of DNA structure formation using small molecules.

Authors:  Imee M A Del Mundo; Karen M Vasquez; Guliang Wang
Journal:  Biochim Biophys Acta Mol Cell Res       Date:  2019-09-03       Impact factor: 4.739

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