Literature DB >> 28755896

Clinical Genomics in Inflammatory Bowel Disease.

Holm H Uhlig1, Aleixo M Muise2.   

Abstract

Genomic technologies inform the complex genetic basis of polygenic inflammatory bowel disease (IBD) as well as Mendelian disease-associated IBD. Aiming to diagnose patients that present with extreme phenotypes due to monogenic forms of IBD, genomics has progressed from 'orphan disease' research towards an integrated standard of clinical care. Advances in diagnostic clinical genomics are increasingly complemented by pathway-specific therapies that aim to correct the consequences of genetic defects. This highlights the exceptional potential for personalized precision medicine. IBD is nevertheless a challenging example for genomic medicine because the overall fraction of patients with Mendelian defects is low, the number of potential candidate genes is high, and interventional evidence is still emerging. We discuss requirements and prospects of explanatory and predictive clinical genomics in IBD.
Copyright © 2017 The Authors. Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  Crohn’s disease; exome sequencing; inflammatory bowel disease; next-generation sequencing; ulcerative colitis

Mesh:

Year:  2017        PMID: 28755896     DOI: 10.1016/j.tig.2017.06.008

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  25 in total

1.  Artificial intelligence and inflammatory bowel disease: practicalities and future prospects.

Authors:  Johanne Brooks-Warburton; James Ashton; Anjan Dhar; Tony Tham; Patrick B Allen; Sami Hoque; Laurence B Lovat; Shaji Sebastian
Journal:  Frontline Gastroenterol       Date:  2021-12-10

Review 2.  The current state of the art for biological therapies and new small molecules in inflammatory bowel disease.

Authors:  Sudarshan Paramsothy; Adam K Rosenstein; Saurabh Mehandru; Jean-Frederic Colombel
Journal:  Mucosal Immunol       Date:  2018-06-15       Impact factor: 7.313

3.  Prevalence and Clinical Features of Inflammatory Bowel Diseases Associated With Monogenic Variants, Identified by Whole-Exome Sequencing in 1000 Children at a Single Center.

Authors:  Eileen Crowley; Neil Warner; Jie Pan; Sam Khalouei; Abdul Elkadri; Karoline Fiedler; Justin Foong; Andrei L Turinsky; Dana Bronte-Tinkew; Shiqi Zhang; Jamie Hu; David Tian; Dalin Li; Julie Horowitz; Iram Siddiqui; Julia Upton; Chaim M Roifman; Peter C Church; Donna A Wall; Arun K Ramani; Daniel Kotlarz; Christoph Klein; Holm Uhlig; Scott B Snapper; Claudia Gonzaga-Jauregui; Andrew D Paterson; Dermot P B McGovern; Michael Brudno; Thomas D Walters; Anne M Griffiths; Aleixo M Muise
Journal:  Gastroenterology       Date:  2020-02-19       Impact factor: 22.682

Review 4.  Interrogating host immunity to predict treatment response in inflammatory bowel disease.

Authors:  Jonathan L Digby-Bell; Raja Atreya; Giovanni Monteleone; Nick Powell
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2019-11-25       Impact factor: 46.802

Review 5.  A Systematic Review of Monogenic Inflammatory Bowel Disease.

Authors:  Ryusuke Nambu; Neil Warner; Daniel J Mulder; Daniel Kotlarz; Dermot P B McGovern; Judy Cho; Christoph Klein; Scott B Snapper; Anne M Griffiths; Itaru Iwama; Aleixo M Muise
Journal:  Clin Gastroenterol Hepatol       Date:  2021-03-18       Impact factor: 11.382

6.  Clinical Genomics for the Diagnosis of Monogenic Forms of Inflammatory Bowel Disease: A Position Paper From the Paediatric IBD Porto Group of European Society of Paediatric Gastroenterology, Hepatology and Nutrition.

Authors:  Holm H Uhlig; Fabienne Charbit-Henrion; Daniel Kotlarz; Dror S Shouval; Tobias Schwerd; Caterina Strisciuglio; Lissy de Ridder; Johan van Limbergen; Marina Macchi; Scott B Snapper; Frank M Ruemmele; David C Wilson; Simon P L Travis; Anne M Griffiths; Dan Turner; Christoph Klein; Aleixo M Muise; Richard K Russell
Journal:  J Pediatr Gastroenterol Nutr       Date:  2021-03-01       Impact factor: 3.288

7.  Human ALPI deficiency causes inflammatory bowel disease and highlights a key mechanism of gut homeostasis.

Authors:  Marianna Parlato; Fabienne Charbit-Henrion; Jie Pan; Claudio Romano; Rémi Duclaux-Loras; Marie-Helene Le Du; Neil Warner; Paola Francalanci; Julie Bruneau; Marc Bras; Mohammed Zarhrate; Bernadette Bègue; Nicolas Guegan; Sabine Rakotobe; Nathalie Kapel; Paola De Angelis; Anne M Griffiths; Karoline Fiedler; Eileen Crowley; Frank Ruemmele; Aleixo M Muise; Nadine Cerf-Bensussan
Journal:  EMBO Mol Med       Date:  2018-04       Impact factor: 12.137

Review 8.  Very Early Onset Inflammatory Bowel Disease: A Clinical Approach With a Focus on the Role of Genetics and Underlying Immune Deficiencies.

Authors:  Jodie Ouahed; Elizabeth Spencer; Daniel Kotlarz; Dror S Shouval; Matthew Kowalik; Kaiyue Peng; Michael Field; Leslie Grushkin-Lerner; Sung-Yun Pai; Athos Bousvaros; Judy Cho; Carmen Argmann; Eric Schadt; Dermot P B Mcgovern; Michal Mokry; Edward Nieuwenhuis; Hans Clevers; Fiona Powrie; Holm Uhlig; Christoph Klein; Aleixo Muise; Marla Dubinsky; Scott B Snapper
Journal:  Inflamm Bowel Dis       Date:  2020-05-12       Impact factor: 5.325

9.  Novel CARMIL2 loss-of-function variants are associated with pediatric inflammatory bowel disease.

Authors:  Mara Cananzi; Aleixo M Muise; Luca Bosa; Vritika Batura; Davide Colavito; Karoline Fiedler; Paola Gaio; Conghui Guo; Qi Li; Antonio Marzollo; Claudia Mescoli; Ryusuke Nambu; Jie Pan; Giorgio Perilongo; Neil Warner; Shiqi Zhang; Daniel Kotlarz; Christoph Klein; Scott B Snapper; Thomas D Walters; Alberta Leon; Anne M Griffiths
Journal:  Sci Rep       Date:  2021-03-15       Impact factor: 4.379

10.  Mucosal Invariant T cells are Diminished in Very Early-Onset Inflammatory Bowel Disease.

Authors:  Ying Dou; Kelly Maurer; Maire Conrad; Trusha Patel; Rawan Shraim; Kathleen E Sullivan; Judith Kelsen
Journal:  J Pediatr Gastroenterol Nutr       Date:  2021-10-01       Impact factor: 3.288

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