Literature DB >> 28754496

Single-cell RNA sequencing: Technical advancements and biological applications.

Eva Hedlund1, Qiaolin Deng2.   

Abstract

Cells are the basic building blocks of organisms and each cell is unique. Single-cell RNA sequencing has emerged as an indispensable tool to dissect the cellular heterogeneity and decompose tissues into cell types and/or cell states, which offers enormous potential for de novo discovery. Single-cell transcriptomic atlases provide unprecedented resolution to reveal complex cellular events and deepen our understanding of biological systems. In this review, we summarize and compare single-cell RNA sequencing technologies, that were developed since 2009, to facilitate a well-informed choice of method. The applications of these methods in different biological contexts are also discussed. We anticipate an ever-increasing role of single-cell RNA sequencing in biology with further improvement in providing spatial information and coupling to other cellular modalities. In the future, such biological findings will greatly benefit medical research.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Mesh:

Year:  2017        PMID: 28754496     DOI: 10.1016/j.mam.2017.07.003

Source DB:  PubMed          Journal:  Mol Aspects Med        ISSN: 0098-2997


  75 in total

1.  Single-cell transcriptomics from human pancreatic islets: sample preparation matters.

Authors:  Lori L Bonnycastle; Derek E Gildea; Tingfen Yan; Narisu Narisu; Amy J Swift; Tyra G Wolfsberg; Michael R Erdos; Francis S Collins
Journal:  Biol Methods Protoc       Date:  2020-01-16

2.  Immune escape mechanisms for TCRLBCL.

Authors:  Wing C Chan
Journal:  Blood       Date:  2021-03-11       Impact factor: 22.113

Review 3.  Beyond bulk: a review of single cell transcriptomics methodologies and applications.

Authors:  Ashwinikumar Kulkarni; Ashley G Anderson; Devin P Merullo; Genevieve Konopka
Journal:  Curr Opin Biotechnol       Date:  2019-04-10       Impact factor: 9.740

Review 4.  Using Pharmacology to Squeeze the Life Out of Childhood Leukemia, and Potential Strategies to Achieve Breakthroughs in Medulloblastoma Treatment.

Authors:  Juwina Wijaya; Tomoka Gose; John D Schuetz
Journal:  Pharmacol Rev       Date:  2020-07       Impact factor: 25.468

5.  Molecular characterization of foveal versus peripheral human retina by single-cell RNA sequencing.

Authors:  A P Voigt; S S Whitmore; M J Flamme-Wiese; M J Riker; L A Wiley; B A Tucker; E M Stone; R F Mullins; T E Scheetz
Journal:  Exp Eye Res       Date:  2019-05-08       Impact factor: 3.467

Review 6.  Kidney and organoid single-cell transcriptomics: the end of the beginning.

Authors:  Parker C Wilson; Benjamin D Humphreys
Journal:  Pediatr Nephrol       Date:  2019-01-04       Impact factor: 3.714

Review 7.  Single-Cell RNA-Sequencing in Glioma.

Authors:  Eli Johnson; Katherine L Dickerson; Ian D Connolly; Melanie Hayden Gephart
Journal:  Curr Oncol Rep       Date:  2018-04-10       Impact factor: 5.075

Review 8.  Genome organization in immune cells: unique challenges.

Authors:  Timothy M Johanson; Wing Fuk Chan; Christine R Keenan; Rhys S Allan
Journal:  Nat Rev Immunol       Date:  2019-07       Impact factor: 53.106

9.  Simultaneous detection of multiple mRNAs and proteins in bovine IVD cells and tissue with single cell resolution.

Authors:  Kangning Li; Lara Varden; Althea Henderson; Thomas Lufkin; Petra Kraus
Journal:  Biotechnol Lett       Date:  2020-09-09       Impact factor: 2.461

10.  Single-cell nucleic acid profiling in droplets (SNAPD) enables high-throughput analysis of heterogeneous cell populations.

Authors:  Leland B Hyman; Clare R Christopher; Philip A Romero
Journal:  Nucleic Acids Res       Date:  2021-10-11       Impact factor: 16.971

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