Literature DB >> 28750202

Combinatorial pathway optimization for streamlined metabolic engineering.

Markus Jeschek1, Daniel Gerngross2, Sven Panke3.   

Abstract

Elimination of metabolic flux imbalances in microbial cell factories is an important part in the establishment of viable biotechnological production processes. However, due to the high complexity of cellular metabolism, the limited a priori knowledge about the majority of production pathways and a lack of forward design standards, metabolic engineers strongly rely on empirical screening methodologies to achieve the required improvement of cell behavior. Combinatorial pathway engineering provides an interesting tool to identify global solutions for intricate pathways, but methods for the reduction of combinatorial library size are inevitably required to restrict the experimental effort to an affordable size. Here we review recent advances from this field by scrutinizing commonly applied diversification methods and highlighting crucial strategies for the minimization of experimental effort.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Mesh:

Year:  2017        PMID: 28750202     DOI: 10.1016/j.copbio.2017.06.014

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  19 in total

1.  Cell-Free Protein Synthesis for High-Throughput Biosynthetic Pathway Prototyping.

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2.  First-principles model of optimal translation factors stoichiometry.

Authors:  Jean-Benoît Lalanne; Gene-Wei Li
Journal:  Elife       Date:  2021-09-30       Impact factor: 8.140

3.  ProD: A Tool for Predictive Design of Tailored Promoters in Escherichia coli.

Authors:  Friederike Mey; Jim Clauwaert; Maarten Van Brempt; Michiel Stock; Jo Maertens; Willem Waegeman; Marjan De Mey
Journal:  Methods Mol Biol       Date:  2022

4.  Computational design and engineering of an Escherichia coli strain producing the nonstandard amino acid para-aminophenylalanine.

Authors:  Ali R Zomorrodi; Colin Hemez; Pol Arranz-Gibert; Terrence Wu; Farren J Isaacs; Daniel Segrè
Journal:  iScience       Date:  2022-06-09

Review 5.  Heterologous production of cyanobacterial compounds.

Authors:  Dipesh Dhakal; Manyun Chen; Hendrik Luesch; Yousong Ding
Journal:  J Ind Microbiol Biotechnol       Date:  2021-06-04       Impact factor: 4.258

6.  Large-scale DNA-based phenotypic recording and deep learning enable highly accurate sequence-function mapping.

Authors:  Simon Höllerer; Laetitia Papaxanthos; Anja Cathrin Gumpinger; Katrin Fischer; Christian Beisel; Karsten Borgwardt; Yaakov Benenson; Markus Jeschek
Journal:  Nat Commun       Date:  2020-07-15       Impact factor: 14.919

7.  Start-Stop Assembly: a functionally scarless DNA assembly system optimized for metabolic engineering.

Authors:  George M Taylor; Paweł M Mordaka; John T Heap
Journal:  Nucleic Acids Res       Date:  2019-02-20       Impact factor: 16.971

Review 8.  The Application of Ribosome Engineering to Natural Product Discovery and Yield Improvement in Streptomyces.

Authors:  Saibin Zhu; Yanwen Duan; Yong Huang
Journal:  Antibiotics (Basel)       Date:  2019-08-30

9.  A seamless and iterative DNA assembly method named PS-Brick and its assisted metabolic engineering for threonine and 1-propanol production.

Authors:  Shuwen Liu; Haihan Xiao; Fangfang Zhang; Zheng Lu; Yun Zhang; Aihua Deng; Zhongcai Li; Cui Yang; Tingyi Wen
Journal:  Biotechnol Biofuels       Date:  2019-07-15       Impact factor: 6.040

Review 10.  Application of combinatorial optimization strategies in synthetic biology.

Authors:  Gita Naseri; Mattheos A G Koffas
Journal:  Nat Commun       Date:  2020-05-15       Impact factor: 14.919

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