| Literature DB >> 28749109 |
Ebrahim Eskandari1,2, Alireza Rezaifar, Mohammad Hashemi.
Abstract
Background: DNA repair mechanisms are crucial for sustaining DNA integrity and preventing carcinogenesis. The xeroderma pigmentosum group G (XPG), X-ray repair cross complementing group 2 (XRCC2) and RAD51 are candidate genes for DNA repair pathways.Entities:
Keywords: XPG; XRCC2; RAD51; colorectal cancer; meta-analysis
Year: 2017 PMID: 28749109 PMCID: PMC5648383 DOI: 10.22034/APJCP.2017.18.7.1805
Source DB: PubMed Journal: Asian Pac J Cancer Prev ISSN: 1513-7368
Main Characteristics of Studies Included for the Association between the XPG Asp1104His, XRCC2 Rs3218536 A/G and RAD51 135G/C Polymorphisms and Colorectal Cancer
| Study | Year | Country | Ethnicity | Source of controls | Genotype methods | Genotype (case/control) | Allele (case/control) | PHWE | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Total | Asp/Asp | Asp/His | His/His | Asp | His | |||||||
| Sun et al. | 2015 | China | Asian | HB | PCR–RFLP | 890/910 | 216/227 | 476/497 | 198/186 | 908/951 | 872/869 | 0.004 |
| Kabzinski, J., et al. | 2015 | Poland | Caucasian | HB | QPCR | 234/238 | 36/43 | 171/175 | 27/20 | 243/261 | 225/215 | 0.001 |
| Paszkowska-Szczur, K., et al. | 2015 | Poland | Caucasian | PB | MassARRAY | 733/1358 | 429/869 | 272/404 | 32/85 | 1130/2142 | 336/576 | 0.001 |
| Steck, S. E, et al. | 2014 | USA | African | PB | MassARRAY | 224/317 | 65/100 | 120/151 | 39/66 | 250/351 | 198/283 | 0.519 |
| Steck, S. E., et al. | 2014 | USA | Caucasian | PB | MassARRAY | 298/532 | 183/335 | 100/170 | 15/27 | 466/840 | 130/224 | 0.372 |
| Du, H., et al. | 2014 | China | Asian | HB | Taqman Assay | 878/884 | 286/355 | 459/405 | 133/124 | 1031/1115 | 725/653 | 0.622 |
| Liu, D., et al. | 2012 | China | Asian | PB | PCR–RFLP | 1028/1085 | 233/329 | 603/537 | 192/219 | 1069/1195 | 987/975 | 0.996 |
| Gil, J., et al. | 2012 | Poland | Caucasian | PB | PCR–RFLP | 132/100 | 86/64 | 35/31 | 11-May | 207/159 | 57/41 | 0.624 |
| Canbay, E., et al. | 2011 | Turkey | Caucasian | HB | PCR–RFLP | 79/247 | 43/148 | 34/83 | Feb-16 | 120/379 | 38/115 | 0.351 |
| Joshi, A. D., et al | 2009 | USA | Caucasian | FB | Taqman assays | 308/361 | 183/213 | 114/137 | 11-Nov | 480/563 | 136/159 | 0.046 |
| Pardini, B., et al | 2008 | Czech | Caucasian | HB | PCR–RFLP | 532/532 | 334/356 | 177/153 | 21/23 | 845/865 | 219/199 | 0.211 |
| Huang, W. Y., et al. | 2006 | USA | Caucasian | PB | Sequencing | 679/697 | 407/403 | 243/265 | 29/29 | 1057/1071 | 301/323 | 0.073 |
| Bigler, J., et al. | 2005 | USA | Caucasian | PB | Taqman assays | 713/616 | 440/353 | 237/226 | 36/37 | 1117/932 | 309/300 | 0.917 |
| Mort, R., et al. | 2003 | UK | Caucasian | HB | PCR-RFLP | 40/33 | - | - | - | 67/58 | 13/22 | - |
| XRCC2 rs3218536 A/G | Year | Country | Ethnicity | Source | Genotype methods | Total | A/A | G/A | G/G | A | G | PHWE |
| Cetinkunar, S., et al. | 2015 | Turkey | Caucasian | HB | PCR-RFLP | 71/86 | 09-Nov | 30/21 | 32/54 | 48/43 | 94/129 | 0.001 |
| Krupa, R., et al. | 2011 | Poland | Caucasian | HB | PCR-RFLP | 100/100 | 75/84 | 18/14 | 07-Feb | 168/182 | 32/18 | 0.146 |
| Curtin, K., et al. | 2009 | UK & US | Caucasian | PB | Sequencing | 1227/1380 | 1014/1167 | 185/204 | 10-Sep | 2213/2538 | 205/222 | 0.979 |
| Moreno [16] | 2006 | Spain | Caucasian | HB | APEX | 350/316 | 287/265 | 57/45 | 06-Jun | 631/575 | 69/57 | 0.018 |
| Tranah, G. J., et al. | 2004 | USA | Caucasian | PB | TaqMan | 518/522 | 450/441 | A/G+G/G | - | - | - | - |
| Tranah, G. J., et al. | 2004 | USA | Caucasian | PB | TaqMan | 354/688 | 302/582 | A/G+G/G | - | - | - | - |
| RAD51 135 G/C | Year | Country | Ethnicity | Source | Genotyping | Total | G/G | G/C | C/C | G | C | PHWE |
| Cetinkunar, S., et al. | 2015 | Turkey | Caucasian | HB | PCR-RFLP | 71/86 | 39/21 | 21-Nov | Nov-54 | 99/53 | 43/119 | 0.001 |
| Nissar, S., et al. | 2014 | India | Asian | HB | PCR-RFLP | 100/120 | 25/60 | 56/25 | 19/35 | 106/145 | 94/95 | 0.001 |
| Gil, J., et al. | 2012 | Poland | Caucasian | HB | PCR-RFLP | 133/100 | 100/73 | 29/27 | 4/0 | 229/173 | 37/54 | 0.118 |
| Mucha, B., et al. | 2012 | Poland | Caucasian | PB | PCR-RFLP | 200/200 | 161/157 | 34/37 | 05-Jun | 356/351 | 44/49 | 0.048 |
| Romanowicz-Makowska, H., et al. | 2012 | Poland | Caucasian | HB | PCR-RFLP | 320/320 | 51/91 | 56/164 | 213/65 | 158/346 | 482/294 | 0.569 |
| Krupa, R., et al. | 2011 | Poland | Caucasian | HB | PCR-RFLP | 100/100 | 61/36 | 36/35 | Mar-29 | 158/107 | 42/93 | 0.003 |
HWE, Hardy-Weinberg equilibrium; PCR-RFLP, polymerase chain reaction-restriction fragment length polymorphism;. PB, population-based; HB: hospital-based; FB, Family-based; NHS, Nurses’ Health Study; HPFS, Health Professionals Follow-up Study; APEX, arrayed primer extension
Figure 1Flow Diagram of Included Studies for This Meta-Analysis
Main Results of Pooled ORs for the XPG Asp1104His, XRCC2 Rs3218536 A/G And RAD51 135G/C Polymorphisms in Colorectal Cancer
| Variables | No[ | Allele | Codominant (eterozygous) | Codominant (homozygous) | Dominant | Recessive |
|---|---|---|---|---|---|---|
| His vs Asp | His/Asp vs Asp/Asp | His/His vs Asp/Asp | His/Asp+His/His vs Asp/Asp | His/His vs His/Asp+Asp/Asp | ||
| XPG Asp1104His | OR (95 % CI) | OR (95 % CI) | OR (95 % CI) | OR (95 % CI) | OR (95 % CI) | |
| Total | 14 | 1.06(1.01-1.12) | 1.16(1.02-1.31) | 1.09(0.97-1.23) | 1.12(0.99-1.25) | 0.98(0.88-1.09) |
| P/Ph
[ | 0.02/0.22/21 | 0.02/0.002/61 | 0.15/0.50/0 | 0.06/0.005/58 | 0.65/0.54/0 | |
| Ethnicity | ||||||
| Asian | 3 | 1.12(1.04-1.21) | 1.31(1.01-1.70) | 1.22(1.05-1.43) | 1.29(1.05-1.60) | 1.02(0.90-1.17) |
| P/Ph/I2 (%) | 0.002/0.38/0 | 0.04/0.01/78 | 0.01/0.69/0 | 0.02/0.04/69 | 0.73/37/0 | |
| Caucasian | 10 | 1.01(0.94-1.09) | 1.08(0.98-1.19) | 0.93(0.76-1.14) | 1.04(0.95-1.14) | 0.91(0.75-1.12) |
| P/Ph/I2 (%) | 0.70/0.32/13 | 0.10/0.06/47 | 0.50/0.65/0 | 0.35/0.11/39 | 0.37/0.50/0 | |
| Source of controls | ||||||
| Population-based | 7 | 1.04(0.97-1.11) | 1.14(0.93-1.39) | 1.01(0.85-1.20) | 1.01(0.76-1.34) | 0.88(0.75-1.02) |
| P/Ph/I2 (%) | 0.33/0.19/31 | 0.21/0.001/75 | 0.95/0.29/18 | 0.95/0.001/88 | 0.09/0.72/0 | |
| Hospital-based | 6 | 1.11(1.02-1.20) | 1.22(1.08-1.38) | 1.19(0.99-1.42) | 1.21(1.08-1.37) | 1.09(0.93-1.28) |
| P/Ph/I2 (%) | 0.01/0.31/16 | 0.001/0.29/20 | 0.06/0.46/0 | 0.001/0.42/0 | 0.28/0.55/0 | |
| XRCC2 rs3218536 A/G | ||||||
| Total | 6 | G vs A | AG vs AA | GG vs AA | AG+GG vs AA | GG vs AA+AG |
| OR (95 % CI) | 1.06 [0.90, 1.24] | 1.10 [0.92, 1.33] | 1.18 [0.69, 2.00] | 1.02 [0.89, 1.18] | 0.83 [0.54, 1.30] | |
| P/Ph
[ | 0.49/0.06/60 | 0.29/0.67/0 | 0.54/0.35/9 | 0.76/0.51/0 | 0.42/0.07/57 | |
| Population-based | 3 | |||||
| OR (95 % CI) | 0.99 [0.82, 1.19] | 1.07 [0.86, 1.32] | 0.99 [0.51, 1.92] | 1.05 [0.86, 1.29] | 0.67 [0.40, 1.13] | |
| P/Ph/I2 (%) | 0.91/0.07/69 | 0.55/0.34/0 | 0.97/0.40/0 | 0.63/0.93/0 | 0.13/0.09/65 | |
| Hospital-based | 3 | |||||
| OR (95 % CI) | 1.28 [0.94, 1.76] | 1.23 [0.85, 1.78] | 1.60 [0.66, 3.89] | 1.27 [0.90, 1.80] | 1.54 [0.64, 3.75] | |
| P/Ph/I2 (%) | 0.12/0.13/57 | 0.28/0.64/0 | 0.30/0.15/52 | 0.18/0.30/7 | 0.34/0.16/50 | |
| RAD51 135 G/C | ||||||
| Total | 6 | C vs G | GC vs GG | CC vs GG | CC+GC vs GG | CC vs GC+GG |
| OR (95 % CI) | 1.21 [1.05, 1.39] | 0.98 [0.77, 1.24] | 1.28 [0.98, 1.67] | 1.06 [0.87, 1.31] | 1.62 [1.30, 2.02] | |
| P/Ph
[ | 0.001/0.01/97 | 0.85/0.01/85 | 0.07/0.01/95 | 0.55/0.01/91 | 0.001/0.01/97 | |
, Number of comparisons;
, P value of Q test for heterogeneity test;
c, Random model was used when P value for heterogeneity test was below 0.05; otherwise, fixed model was used
Figure 2Forest Plot of the Risk of Colorectal Cancer Associated with XPG Asp1104His Polymorphism in Allele Comparison
Figure 3Forest Plot of the Risk of Colorectal Cancer Associated with XPG Asp1104His Polymorphism in Codominant (Heterozygote) Comparison