Literature DB >> 28748934

Synergy of synthesis, computation and NMR reveals correct baulamycin structures.

Jingjing Wu1, Paula Lorenzo1, Siying Zhong1, Muhammad Ali1, Craig P Butts1, Eddie L Myers1, Varinder K Aggarwal1.   

Abstract

Small-molecule, biologically active natural products continue to be our most rewarding source of, and inspiration for, new medicines. Sometimes we happen upon such molecules in minute quantities in unique, difficult-to-reach, and often fleeting environments, perhaps never to be discovered again. In these cases, determining the structure of a molecule-including assigning its relative and absolute configurations-is paramount, enabling one to understand its biological activity. Molecules that comprise stereochemically complex acyclic and conformationally flexible carbon chains make such a task extremely challenging. The baulamycins (A and B) serve as a contemporary example. Isolated in small quantities and shown to have promising antimicrobial activity, the structure of the conformationally flexible molecules was determined largely through J-based configurational analysis, but has been found to be incorrect. Our subsequent campaign to identify the true structures of the baulamycins has revealed a powerful method for the rapid structural elucidation of such molecules. Specifically, the prediction of nuclear magnetic resonance (NMR) parameters through density functional theory-combined with an efficient sequence of boron-based synthetic transformations, which allowed an encoded (labelled) mixture of natural-product diastereomers to be prepared-enabled us rapidly to pinpoint and synthesize the correct structures.

Entities:  

Mesh:

Substances:

Year:  2017        PMID: 28748934     DOI: 10.1038/nature23265

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  19 in total

1.  Assigning stereochemistry to single diastereoisomers by GIAO NMR calculation: the DP4 probability.

Authors:  Steven G Smith; Jonathan M Goodman
Journal:  J Am Chem Soc       Date:  2010-09-22       Impact factor: 15.419

2.  Subtle temperature-induced changes in small molecule conformer dynamics - observed and quantified by NOE spectroscopy.

Authors:  C R Jones; M D Greenhalgh; J R Bame; T J Simpson; R J Cox; J W Marshall; C P Butts
Journal:  Chem Commun (Camb)       Date:  2016-02-18       Impact factor: 6.222

Review 3.  Natural Products as Sources of New Drugs from 1981 to 2014.

Authors:  David J Newman; Gordon M Cragg
Journal:  J Nat Prod       Date:  2016-02-07       Impact factor: 4.050

Review 4.  Strategic paradigm shifts in the antimicrobial drug discovery process of the 21st century.

Authors:  Luis E N Quadri
Journal:  Infect Disord Drug Targets       Date:  2007-09

5.  Stereochemical Determination of Acyclic Structures Based on Carbon-Proton Spin-Coupling Constants. A Method of Configuration Analysis for Natural Products.

Authors:  Nobuaki Matsumori; Daisuke Kaneno; Michio Murata; Hideshi Nakamura; Kazuo Tachibana
Journal:  J Org Chem       Date:  1999-02-05       Impact factor: 4.354

6.  Chiral Brønsted acid-catalyzed allylboration of aldehydes.

Authors:  Pankaj Jain; Jon C Antilla
Journal:  J Am Chem Soc       Date:  2010-09-01       Impact factor: 15.419

Review 7.  Computational prediction of 1H and 13C chemical shifts: a useful tool for natural product, mechanistic, and synthetic organic chemistry.

Authors:  Michael W Lodewyk; Matthew R Siebert; Dean J Tantillo
Journal:  Chem Rev       Date:  2011-11-17       Impact factor: 60.622

8.  A guide to small-molecule structure assignment through computation of (¹H and ¹³C) NMR chemical shifts.

Authors:  Patrick H Willoughby; Matthew J Jansma; Thomas R Hoye
Journal:  Nat Protoc       Date:  2014-02-20       Impact factor: 13.491

Review 9.  Antibiotics for emerging pathogens.

Authors:  Michael A Fischbach; Christopher T Walsh
Journal:  Science       Date:  2009-08-28       Impact factor: 47.728

10.  Hydroxyl-directed stereoselective diboration of alkenes.

Authors:  Thomas P Blaisdell; Thomas C Caya; Liang Zhang; Amparo Sanz-Marco; James P Morken
Journal:  J Am Chem Soc       Date:  2014-06-24       Impact factor: 15.419

View more
  12 in total

1.  Organic chemistry: Molecular structure assignment simplified.

Authors:  Severin K Thompson; Thomas R Hoye
Journal:  Nature       Date:  2017-07-26       Impact factor: 49.962

Review 2.  The Molecular Industrial Revolution: Automated Synthesis of Small Molecules.

Authors:  Melanie Trobe; Martin D Burke
Journal:  Angew Chem Int Ed Engl       Date:  2018-03-07       Impact factor: 15.336

3.  Stereochemical revision of xylogranatin F by GIAO and DU8+ NMR calculations.

Authors:  Yannan Liu; Tina A Holt; Andrei Kutateladze; Timothy R Newhouse
Journal:  Chirality       Date:  2020-03-03       Impact factor: 2.437

4.  Consecutive and Selective Double Methylene Insertion of Lithium Carbenoids to Isothiocyanates: A Direct Assembly of Four-Membered Sulfur-Containing Cycles.

Authors:  Raffaele Senatore; Monika Malik; Thierry Langer; Wolfgang Holzer; Vittorio Pace
Journal:  Angew Chem Int Ed Engl       Date:  2021-10-13       Impact factor: 16.823

5.  Stereoselective Synthesis of Baulamycin A.

Authors:  Jonathan R Thielman; David H Sherman; Robert M Williams
Journal:  J Org Chem       Date:  2020-02-07       Impact factor: 4.354

6.  Toward Generalization of Iterative Small Molecule Synthesis.

Authors:  Jonathan W Lehmann; Daniel J Blair; Martin D Burke
Journal:  Nat Rev Chem       Date:  2018-03-07       Impact factor: 34.035

7.  Facile access to functionalized chiral secondary benzylic boronic esters via catalytic asymmetric hydroboration.

Authors:  Suman Chakrabarty; Hector Palencia; Martha D Morton; Ryan O Carr; James M Takacs
Journal:  Chem Sci       Date:  2019-03-25       Impact factor: 9.825

8.  Curdepsidones B⁻G, Six Depsidones with Anti-Inflammatory Activities from the Marine-Derived Fungus Curvularia sp. IFB-Z10.

Authors:  Yi Ding; Faliang An; Xiaojing Zhu; Haiyuan Yu; Liling Hao; Yanhua Lu
Journal:  Mar Drugs       Date:  2019-05-05       Impact factor: 5.118

9.  Structure Determination of a Chloroenyne from Laurencia majuscula Using Computational Methods and Total Synthesis.

Authors:  Erin D Shepherd; Bryony S Dyson; William E Hak; Quynh Nhu N Nguyen; Miseon Lee; Mi Jung Kim; Te-Ik Sohn; Deukjoon Kim; Jonathan W Burton; Robert S Paton
Journal:  J Org Chem       Date:  2019-04-12       Impact factor: 4.354

10.  Total synthesis and complete configurational assignment of amphirionin-2.

Authors:  Shota Kato; Daichi Mizukami; Tomoya Sugai; Masashi Tsuda; Haruhiko Fuwa
Journal:  Chem Sci       Date:  2020-11-20       Impact factor: 9.825

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.