Literature DB >> 28748230

Diffusion Component Analysis: Unraveling Functional Topology in Biological Networks.

Hyunghoon Cho1, Bonnie Berger1,2, Jian Peng1,2,3.   

Abstract

Entities:  

Year:  2015        PMID: 28748230      PMCID: PMC5524124          DOI: 10.1007/978-3-319-16706-0_9

Source DB:  PubMed          Journal:  Res Comput Mol Biol


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  3 in total

1.  Uncovering biological network function via graphlet degree signatures.

Authors:  Tijana Milenković; Natasa Przulj
Journal:  Cancer Inform       Date:  2008-04-14

2.  GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function.

Authors:  Sara Mostafavi; Debajyoti Ray; David Warde-Farley; Chris Grouios; Quaid Morris
Journal:  Genome Biol       Date:  2008-06-27       Impact factor: 13.583

3.  New directions for diffusion-based network prediction of protein function: incorporating pathways with confidence.

Authors:  Mengfei Cao; Christopher M Pietras; Xian Feng; Kathryn J Doroschak; Thomas Schaffner; Jisoo Park; Hao Zhang; Lenore J Cowen; Benjamin J Hescott
Journal:  Bioinformatics       Date:  2014-06-15       Impact factor: 6.937

  3 in total
  14 in total

1.  Framing Electronic Medical Records as Polylingual Documents in Query Expansion.

Authors:  Edward W Huang; Sheng Wang; Doris Jung-Lin Lee; Runshun Zhang; Baoyan Liu; Xuezhong Zhou; ChengXiang Zhai
Journal:  AMIA Annu Symp Proc       Date:  2018-04-16

2.  Genome-Scale Networks Link Neurodegenerative Disease Genes to α-Synuclein through Specific Molecular Pathways.

Authors:  Vikram Khurana; Jian Peng; Chee Yeun Chung; Pavan K Auluck; Saranna Fanning; Daniel F Tardiff; Theresa Bartels; Martina Koeva; Stephen W Eichhorn; Hadar Benyamini; Yali Lou; Andy Nutter-Upham; Valeriya Baru; Yelena Freyzon; Nurcan Tuncbag; Michael Costanzo; Bryan-Joseph San Luis; David C Schöndorf; M Inmaculada Barrasa; Sepehr Ehsani; Neville Sanjana; Quan Zhong; Thomas Gasser; David P Bartel; Marc Vidal; Michela Deleidi; Charles Boone; Ernest Fraenkel; Bonnie Berger; Susan Lindquist
Journal:  Cell Syst       Date:  2017-01-25       Impact factor: 10.304

3.  Computational Biology in the 21st Century: Scaling with Compressive Algorithms.

Authors:  Bonnie Berger; Noah M Daniels; Y William Yu
Journal:  Commun ACM       Date:  2016-08       Impact factor: 4.654

4.  A network integration approach for drug-target interaction prediction and computational drug repositioning from heterogeneous information.

Authors:  Yunan Luo; Xinbin Zhao; Jingtian Zhou; Jinglin Yang; Yanqing Zhang; Wenhua Kuang; Jian Peng; Ligong Chen; Jianyang Zeng
Journal:  Nat Commun       Date:  2017-09-18       Impact factor: 14.919

5.  Hierarchical HotNet: identifying hierarchies of altered subnetworks.

Authors:  Matthew A Reyna; Mark D M Leiserson; Benjamin J Raphael
Journal:  Bioinformatics       Date:  2018-09-01       Impact factor: 6.937

6.  Convolutional Neural Network and Bidirectional Long Short-Term Memory-Based Method for Predicting Drug-Disease Associations.

Authors:  Ping Xuan; Yilin Ye; Tiangang Zhang; Lianfeng Zhao; Chang Sun
Journal:  Cells       Date:  2019-07-11       Impact factor: 6.600

7.  GBDTL2E: Predicting lncRNA-EF Associations Using Diffusion and HeteSim Features Based on a Heterogeneous Network.

Authors:  Jiaqi Wang; Zhufang Kuang; Zhihao Ma; Genwei Han
Journal:  Front Genet       Date:  2020-04-15       Impact factor: 4.599

8.  MultiSourcDSim: an integrated approach for exploring disease similarity.

Authors:  Lei Deng; Danyi Ye; Junmin Zhao; Jingpu Zhang
Journal:  BMC Med Inform Decis Mak       Date:  2019-12-19       Impact factor: 2.796

9.  Accurate prediction of protein-lncRNA interactions by diffusion and HeteSim features across heterogeneous network.

Authors:  Lei Deng; Junqiang Wang; Yun Xiao; Zixiang Wang; Hui Liu
Journal:  BMC Bioinformatics       Date:  2018-10-11       Impact factor: 3.169

Review 10.  Microbiome Multi-Omics Network Analysis: Statistical Considerations, Limitations, and Opportunities.

Authors:  Duo Jiang; Courtney R Armour; Chenxiao Hu; Meng Mei; Chuan Tian; Thomas J Sharpton; Yuan Jiang
Journal:  Front Genet       Date:  2019-11-08       Impact factor: 4.599

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