| Literature DB >> 28740751 |
Ling Li1,2, Libin Guo3,4, Qingshui Wang3,4, Xiaolong Liu2, Yongyi Zeng2, Qing Wen5, Shudong Zhang6, Hang Fai Kwok3, Yao Lin4, Jingfeng Liu1,2.
Abstract
The death-associated protein kinase 1 (DAPK1) can act as an oncogene or a tumor suppressor gene depending on the cellular context as well as external stimuli. Our study aims to investigate the prognostic significance of DAPK1 in liver cancer in both mRNA and protein levels. The mRNA expression of DAPK1 was extracted from the Gene Expression Omnibus database in three independent liver cancer datasets while protein expression of DAPK1 was detected by immunohistochemistry in our Chinese liver cancer patient cohort. The associations between DAPK1 expression and clinical characteristics were tested. DAPK1 mRNA expression was down-regulated in liver cancer. Low levels of DAPK1 mRNA were associated with shorter survival in a liver cancer patient cohort (n = 115; p = 0.041), while negative staining of DAPK1 protein was significantly correlated with shorter time to progression (p = 0.002) and overall survival (p = 0.02). DAPK1 was an independent prognostic marker for both time to progression and overall survival by multivariate analysis. Liver cancer with the b-catenin mutation has a lower DAPK1 expression, suggesting that DAPK1 may be regulated under the b-catenin pathway. In addition, we also identified genes that are co-regulated with DAPK1. DAPK1 expression was positively correlated with IRF2, IL7R, PCOLCE and ZBTB16, and negatively correlated with SLC16A3 in both liver cancer datasets. Among these genes, PCOLCE and ZBTB16 were significantly down-regulated, while SLC16A3 was significantly upregulated in liver cancer. By using connectivity mapping of these co-regulated genes, we have identified amcinonide and sulpiride as potential small molecules that could potentially reverse DAPK1/PCOLCE/ZBTB16/SLC16A3 expression. Our study demonstrated for the first time that both DAPK1 mRNA and protein expression levels are important prognostic markers in liver cancer, and have identified genes that may contribute to DAPK1-mediated liver carcinogenesis.Entities:
Keywords: DAPK1; IHC; Liver cancer; Prognosis; Survival
Year: 2017 PMID: 28740751 PMCID: PMC5520959 DOI: 10.7717/peerj.3568
Source DB: PubMed Journal: PeerJ ISSN: 2167-8359 Impact factor: 2.984
Patients’ clinical features.
Patient clinical and pathologic features (n = 101).
| Number of cases | % | Median (range) | |
|---|---|---|---|
| Age | 101 | 100 | 51 (14–73) years |
| Tumor size | 101 | 100 | 10 (2–24) cm |
| DAPK1 Staining | |||
| Negative | 44 | 43.6 | |
| Positive | 57 | 56.4 | |
| Sex | |||
| Female | 14 | 13.9 | |
| Male | 87 | 86.1 | |
| Cirrhosis | |||
| Without | 29 | 28.7 | |
| With | 72 | 71.3 | |
| Differentiation | |||
| Well | 26 | 25.7 | |
| Intermediate | 58 | 57.4 | |
| Poor | 17 | 16.8 | |
| Metastasis | |||
| Without | 26 | 25.7 | |
| With | 14 | 13.9 | |
| Missing | 61 | 60.4 |
Figure 1mRNA expression of DAPK1 in liver specimens.
(A) A histogram showing the percentage of cases with different levels of DAPK1 mRNA expression in the GSE25097 dataset with four different types of liver specimens. (B) A histogram showing the percentage of cases with different levels of DAPK1 mRNA expression in the GSE36376 dataset with two different types of liver specimens. (C) Kaplan–Meier overall survival curves for patients with different levels of DAPK1 mRNA expression in liver cancer cohort GSE76427 (D) Kaplan–Meier relapse-free survival curves for patients with different levels of DAPK1 mRNA expression in liver cancer cohort GSE76427.
Figure 2Protein expression of DAPK1 in liver cancer specimens.
(A) Representative immunohistochemistry images for liver cancer specimens stained negative and positive for DAPK1. Scale bar = 100 µm. (B) Kaplan–Meier time to progression curves for patients with different types of staining for DAPK1 in the in-house liver cancer cohort. (C) Kaplan–Meier overall survival curves for patients with different types of staining for DAPK1 in the in-house liver cancer cohort. (D) Kaplan–Meier time to progression curves for patients with different types of staining for DAPK1 in patients without cirrhosis. (E) Kaplan–Meier time to progression curves for patients with different types of staining for DAPK1 in patients with cirrhosis. (F) Kaplan–Meier overall survival curves for patients with different types of staining for DAPK1 in patients without cirrhosis. (G) Kaplan–Meier overall survival curves for patients with different types of staining for DAPK1 in patients with cirrhosis.
Cox regression.
(A) Cox-regression analysis of time to progression. (B) Cox-regression analysis of overall survival.
| Clinicopathological variables | Univariate analysis | Multivariate analysis | ||
|---|---|---|---|---|
| Hazard ratio (95% CI) | Hazard ratio (95% CI) | |||
| Sex | 2.679 (1.154–6.223) | 0.022 | 2.861 (1.210–6.762) | 0.017 |
| Age | 0.964 (0.941–0.988) | 0.004 | 0.961 (0.937–0.985) | 0.002 |
| Tumor size | 1.061 (1.008–1.115) | 0.022 | 1.063 (1.008–1.121) | 0.025 |
| Tumor number | 1.088 (0.701–1.689) | 0.707 | ||
| Cirrhosis status | 0.909 (0.678–1.218) | 0.522 | ||
| Differentiation status | 0.770 (0.541–1.097) | 0.770 | ||
| Sex | 1.400 (0.721–2.722) | 0.320 | ||
| Age | 0.969 (0.948–0.992) | 0.007 | 0.976 (0.954–0.997) | 0.027 |
| Tumor size | 1.077 (1.029–1.128) | 0.001 | 1.077 (1.030–1.127) | 0.001 |
| Tumor number | 1.021 (0.644–1.618) | 0.931 | ||
| Cirrhosis status | 0.841 (0.636–1.113) | 0.227 | ||
| Differentiation status | 0.675 (0.484–0.941) | 0.021 | ||
Figure 3The association between beta-catenin and DAPK1 expression.
(A) A box plot showing DAPK1 mRNA expression in liver cancer specimens with different types of gene signature. (B) A box plot showing DAPK1 mRNA in liver cancer specimens with different mutational status of beta-catenin.
Figure 4The expression levels of SLC16A3, PCOLCE and ZBTB16 in non-tumor and tumor liver specimens.
Error plots for the mRNA expression of (A) SCL16A3, (B) PCOLCE and (C) ZBTB16 in GSE25097 and (D) SCL16A3, (E) PCOLCE and (F) ZBTB16 in GSE36376 liver patient cohorts.