| Literature DB >> 28738085 |
Yan Liu1, Stella C Watson1, Jenna R Gettings1, Robert B Lund1, Shila K Nordone2, Michael J Yabsley3, Christopher S McMahan1.
Abstract
This paper forecasts the 2016 canine Anaplasma spp. seroprevalence in the United States from eight climate, geographic and societal factors. The forecast's construction and an assessment of its performance are described. The forecast is based on a spatial-temporal conditional autoregressive model fitted to over 11 million Anaplasma spp. seroprevalence test results for dogs conducted in the 48 contiguous United States during 2011-2015. The forecast uses county-level data on eight predictive factors, including annual temperature, precipitation, relative humidity, county elevation, forestation coverage, surface water coverage, population density and median household income. Non-static factors are extrapolated into the forthcoming year with various statistical methods. The fitted model and factor extrapolations are used to estimate next year's regional prevalence. The correlation between the observed and model-estimated county-by-county Anaplasma spp. seroprevalence for the five-year period 2011-2015 is 0.902, demonstrating reasonable model accuracy. The weighted correlation (accounting for different sample sizes) between 2015 observed and forecasted county-by-county Anaplasma spp. seroprevalence is 0.987, exhibiting that the proposed approach can be used to accurately forecast Anaplasma spp. seroprevalence. The forecast presented herein can a priori alert veterinarians to areas expected to see Anaplasma spp. seroprevalence beyond the accepted endemic range. The proposed methods may prove useful for forecasting other diseases.Entities:
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Year: 2017 PMID: 28738085 PMCID: PMC5524335 DOI: 10.1371/journal.pone.0182028
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Factors purported to be associated with Anaplasma spp. seroprevalence.
| Factor | Data period | Scale | Notation | Range |
|---|---|---|---|---|
| Annual temperature (°F) | 1895—2015 | CD | [34.59, 77.14] | |
| Annual precipitation (in) | 1895—2015 | CD | [0.30, 10.73] | |
| Annual relative humidity (%) | 2006—2015 | CD | [17.98, 88.73] | |
| Elevation (ft) | 2012 | C | [10, 14495] | |
| Perc. forest coverage (%) | 2012 | C | [0.00, 32] | |
| Perc. surface water coverage (%) | 2010 | C | [0.00, 91] | |
| Population density (ppsm) | 2011-2014 | C | [0.10, 36041.11] | |
| Median household income ($) | 1997-2014 | C | [20990, 125635] |
For further discussion, including the source of each factor, see [19]. Note the following abbreviations are used: persons per square mile (ppsm), climate division (CD), county (C).
Fig 1Empirical county-by-county Anaplasma spp. seroprevalence aggregated over 2011-2015.
Fig 2Baseline map of Anaplasma spp. seroprevalence.
Parameter estimates from the full model.
| Factor | Estimate | 95% HPD Interval |
|---|---|---|
| Annual temperature (°F) | -0.021 | [-0.036, -0.008] |
| Annual precipitation (in) | -0.004 | [-0.053, 0.037] |
| Annual relative humidity (%) | -0.001 | [-0.008, 0.004] |
| Elevation (ft) | 0.032 | [0.002, 0.061] |
| Percentage forest coverage (%) | 3.039 | [1.914, 4.045] |
| Percentage surface water coverage (%) | 0.398 | [0.130, 0.692] |
| Population density (ppsm) | -2.765e-5 | [-4.473e-5, -0.976e-5] |
| Median household income ($) | 0.002 | [-0.001, 0.005] |
Parameter estimates from the selected model.
| Factor | Estimate | 95% HPD Interval |
|---|---|---|
| Annual temperature (°F) | -0.019 | [-0.031, -0.004] |
| Percentage forest coverage (%) | 2.881 | [1.855, 4.065] |
| Percentage surface water coverage (%) | 0.389 | [0.112, 0.675] |
| Elevation (ft) | 0.033 | [0.005, 0.058] |
| Population density (ppsm) | -3.090e-5 | [-4.635e-5, -1.464e-5] |
Fig 3Aggregated model-based estimates of Anaplasma spp. seroprevalence.
Fig 42015 forecasted Anaplasma spp. seroprevalence.
Fig 52015 observed Anaplasma spp. seroprevalence.
Fig 62016 forecasted Anaplasma spp. seroprevalence.