Literature DB >> 28737389

Glycosyl Cations versus Allylic Cations in Spontaneous and Enzymatic Hydrolysis.

Phillip M Danby1, Stephen G Withers1.   

Abstract

Enzymatic prenyl and glycosyl transfer are seemingly unrelated reactions that yield molecules and protein modifications with disparate biological functions. However, both reactions employ diphosphate-activated donors and each proceed via cationic species: allylic cations and oxocarbenium ions, respectively. In this study, we explore the relationship between these processes by preparing valienyl ethers to serve as glycoside mimics that are capable of allylic rather than oxocarbenium cation stabilization. Rate constants for spontaneous hydrolysis of aryl glycosides and their analogous valienyl ethers were found to be almost identical, as were the corresponding activation enthalpies and entropies. This close similarity extended to the associated secondary kinetic isotope effects (KIEs), indicating very similar transition state stabilities and structures. Screening a library of over 100 β-glucosidases identified a number of enzymes that catalyze hydrolysis of these valienyl ethers with kcat values up to 20 s-1. Detailed analysis of one such enzyme showed that ether hydrolysis occurs via the analogous mechanisms found for glycosides, and through a very similar transition state. This suggests that the generally lower rates of enzymatic cleavage of the cyclitol ethers reflects evolutionary specialization of these enzymes toward glycosides rather than inherent reactivity differences.

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Year:  2017        PMID: 28737389     DOI: 10.1021/jacs.7b05628

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  6 in total

Review 1.  The Experimental Evidence in Support of Glycosylation Mechanisms at the SN1-SN2 Interface.

Authors:  Philip Ouma Adero; Harsha Amarasekara; Peng Wen; Luis Bohé; David Crich
Journal:  Chem Rev       Date:  2018-05-30       Impact factor: 60.622

2.  Glycoside Hydrolases Restrict the Side Chain Conformation of Their Substrates To Gain Additional Transition State Stabilization.

Authors:  Jonathan C K Quirke; David Crich
Journal:  J Am Chem Soc       Date:  2020-09-24       Impact factor: 15.419

3.  Development of an active site titration reagent for α-amylases.

Authors:  Ryan P Sweeney; Phillip M Danby; Andreas Geissner; Ryan Karimi; Jesper Brask; Stephen G Withers
Journal:  Chem Sci       Date:  2020-11-03       Impact factor: 9.825

4.  Side Chain Conformation Restriction in the Catalysis of Glycosidic Bond Formation by Leloir Glycosyltransferases, Glycoside Phosphorylases, and Transglycosidases.

Authors:  Jonathan C K Quirke; David Crich
Journal:  ACS Catal       Date:  2021-04-13       Impact factor: 13.084

5.  Glycoside hydrolase stabilization of transition state charge: new directions for inhibitor design.

Authors:  Weiwu Ren; Marco Farren-Dai; Natalia Sannikova; Katarzyna Świderek; Yang Wang; Oluwafemi Akintola; Robert Britton; Vicent Moliner; Andrew J Bennet
Journal:  Chem Sci       Date:  2020-09-16       Impact factor: 9.825

6.  Revealing the mechanism for covalent inhibition of glycoside hydrolases by carbasugars at an atomic level.

Authors:  Weiwu Ren; Robert Pengelly; Marco Farren-Dai; Saeideh Shamsi Kazem Abadi; Verena Oehler; Oluwafemi Akintola; Jason Draper; Michael Meanwell; Saswati Chakladar; Katarzyna Świderek; Vicent Moliner; Robert Britton; Tracey M Gloster; Andrew J Bennet
Journal:  Nat Commun       Date:  2018-08-13       Impact factor: 14.919

  6 in total

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