Literature DB >> 28731830

Convergence and Divergence in a Long-Term Experiment with Bacteria.

Richard E Lenski.   

Abstract

Suitably designed experiments offer the possibility of quantifying evolutionary convergence because the fraction of replicate populations that converge is known. Here I review an experiment with Escherichia coli, in which 12 populations were founded from the same ancestral strain and have evolved for almost 30 years and more than 65,000 generations under the same conditions. The tension between divergence and convergence has been a major focus of this experiment. I summarize analyses of competitive fitness, correlated responses to different environments, cell morphology, the capacity to use a previously untapped resource, mutation rates, genomic changes, and within-population polymorphisms. These analyses reveal convergence, divergence, and often a complicated mix thereof. Complications include concordance in the direction of evolutionary change with sustained quantitative variation among populations, and the potential for a given trait to exhibit divergence on one timescale and convergence on another. Despite these complications, which also occur in nature, experiments provide a powerful way to study evolutionary convergence based on analyzing replicate lineages that experience the same environment.

Entities:  

Keywords:  Escherichia coli; adaptation; experimental evolution; fitness; mutation rate; parallel evolution

Mesh:

Year:  2017        PMID: 28731830     DOI: 10.1086/691209

Source DB:  PubMed          Journal:  Am Nat        ISSN: 0003-0147            Impact factor:   3.926


  13 in total

1.  Genomic evolution of antibiotic resistance is contingent on genetic background following a long-term experiment with Escherichia coli.

Authors:  Kyle J Card; Misty D Thomas; Joseph L Graves; Jeffrey E Barrick; Richard E Lenski
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-02       Impact factor: 11.205

Review 2.  Biofilm antimicrobial susceptibility through an experimental evolutionary lens.

Authors:  Tom Coenye; Mona Bové; Thomas Bjarnsholt
Journal:  NPJ Biofilms Microbiomes       Date:  2022-10-18       Impact factor: 8.462

3.  Historical contingency and the role of post-invasion evolution in alternative community states.

Authors:  Cara A Faillace; Rita L Grunberg; Peter J Morin
Journal:  Ecology       Date:  2022-06-01       Impact factor: 6.431

4.  FLYCOP: metabolic modeling-based analysis and engineering microbial communities.

Authors:  Beatriz García-Jiménez; José Luis García; Juan Nogales
Journal:  Bioinformatics       Date:  2018-09-01       Impact factor: 6.937

5.  OXA-48-Mediated Ceftazidime-Avibactam Resistance Is Associated with Evolutionary Trade-Offs.

Authors:  Christopher Fröhlich; Vidar Sørum; Ane Molden Thomassen; Pål Jarle Johnsen; Hanna-Kirsti S Leiros; Ørjan Samuelsen
Journal:  mSphere       Date:  2019-03-27       Impact factor: 4.389

6.  Microbial evolutionary strategies in a dynamic ocean.

Authors:  Nathan G Walworth; Emily J Zakem; John P Dunne; Sinéad Collins; Naomi M Levine
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-02       Impact factor: 11.205

7.  The landscape of innovation in bacteria, battleships, and beyond.

Authors:  Terence C Burnham; Michael Travisano
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-29       Impact factor: 11.205

8.  The evolution of trait correlations constrains phenotypic adaptation to high CO2 in a eukaryotic alga.

Authors:  Nathan G Walworth; Jana Hinners; Phoebe A Argyle; Suzana G Leles; Martina A Doblin; Sinéad Collins; Naomi M Levine
Journal:  Proc Biol Sci       Date:  2021-06-16       Impact factor: 5.349

9.  Effects of Genetic and Physiological Divergence on the Evolution of a Sulfate-Reducing Bacterium under Conditions of Elevated Temperature.

Authors:  Megan L Kempher; Xuanyu Tao; Rong Song; Bo Wu; David A Stahl; Judy D Wall; Adam P Arkin; Aifen Zhou; Jizhong Zhou
Journal:  mBio       Date:  2020-08-18       Impact factor: 7.867

10.  Experimental manipulation of selfish genetic elements links genes to microbial community function.

Authors:  Steven D Quistad; Guilhem Doulcier; Paul B Rainey
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-03-23       Impact factor: 6.237

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