Literature DB >> 28730371

Idiomarina andamanensis sp. nov., an alkalitolerant bacterium isolated from Andaman Sea water.

Sherin Zachariah1, Subrata K Das2.   

Abstract

Two closely related aerobic, Gram-negative rod shaped bacteria (strain W5T and W3) were isolated from Andaman Sea. Heterotrophic growth on marine agar was observed at 15-45 °C and pH 6-10. Strain W5T showed maximum 16S rRNA sequence similarity of 99.58% with Idiomarina marina JCM 15083T. DNA fingerprinting analysis by ERIC-REP PCR, PFGE and MLSA revealed differences in banding patterns, also DNA-DNA hybridization values were well below 70% confirming W5T to be a new species. DNA G+C content was 46.7 mol%. Major fatty acids were iso-C15:0, iso-C17:0, iso-C17:1 ω9c, iso-C13:0 3OH, iso-C11:0 3OH and C16:0. Polar lipids included phosphatidylglycerol (PG) and phosphatidylethanolamine (PE) diphosphatidylglycerol (DPG) phospholipid (PL) two aminolipids (AL) and two unidentified lipids (L1-2). Q-8 is the predominant ubiquinone. On the basis of polyphasic taxonomic study, strain W5T is considered to be representative of a new species of the genus Idiomarina, for which the name Idiomarina andamanensis sp. nov. is being proposed. The type strain W5T (= LMG 29773T = JCM 31645T) was isolated from Andaman Sea.

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Keywords:  16S rRNA sequence; Andaman Sea; DNA–DNA hybridization; ERIC-PCR; Idiomarina andamanensis sp. nov; PFGE; REP-PCR

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Year:  2017        PMID: 28730371     DOI: 10.1007/s10482-017-0908-5

Source DB:  PubMed          Journal:  Antonie Van Leeuwenhoek        ISSN: 0003-6072            Impact factor:   2.271


  2 in total

1.  Trophic Specialization Results in Genomic Reduction in Free-Living Marine Idiomarina Bacteria.

Authors:  Qi-Long Qin; Yi Li; Lin-Lin Sun; Zhi-Bin Wang; Shi Wang; Xiu-Lan Chen; Aharon Oren; Yu-Zhong Zhang
Journal:  mBio       Date:  2019-01-15       Impact factor: 7.867

2.  Draft Genome Sequence of Idiomarina sp. Strain W-5T, Isolated from the Andaman Sea.

Authors:  Sushanta Deb; Subrata K Das
Journal:  Microbiol Resour Announc       Date:  2020-01-30
  2 in total

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