Literature DB >> 28727252

Frapbot: An open-source application for FRAP data.

Robin Kohze1, Cindy E J Dieteren2, Werner J H Koopman1, Roland Brock1, Samuel Schmidt1,2.   

Abstract

We introduce Frapbot, a free-of-charge open source software web application written in R, which provides manual and automated analyses of fluorescence recovery after photobleaching (FRAP) datasets. For automated operation, starting from data tables containing columns of time-dependent intensity values for various regions of interests within the images, a pattern recognition algorithm recognizes the relevant columns and identifies the presence or absence of prebleach values and the time point of photobleaching. Raw data, residuals, normalization, and boxplots indicating the distribution of half times of recovery (t1/2 ) of all uploaded files are visualized instantly in a batch-wise manner using a variety of user-definable fitting options. The fitted results are provided as .zip file, which contains .csv formatted output tables. Alternatively, the user can manually control any of the options described earlier.
© 2017 International Society for Advancement of Cytometry. © 2017 International Society for Advancement of Cytometry.

Keywords:  Frapbot; R language; fluorescence recovery after photobleaching; pattern recognition; web-application

Mesh:

Year:  2017        PMID: 28727252     DOI: 10.1002/cyto.a.23172

Source DB:  PubMed          Journal:  Cytometry A        ISSN: 1552-4922            Impact factor:   4.355


  5 in total

1.  The manifold actions of signaling peptides on subcellular dynamics of a receptor specify stomatal cell fate.

Authors:  Xingyun Qi; Akira Yoshinari; Pengfei Bai; Michal Maes; Scott M Zeng; Keiko U Torii
Journal:  Elife       Date:  2020-08-14       Impact factor: 8.140

2.  EasyFRAP-web: a web-based tool for the analysis of fluorescence recovery after photobleaching data.

Authors:  Grigorios Koulouras; Andreas Panagopoulos; Maria A Rapsomaniki; Nickolaos N Giakoumakis; Stavros Taraviras; Zoi Lygerou
Journal:  Nucleic Acids Res       Date:  2018-07-02       Impact factor: 16.971

3.  Tuning the affinity of amphiphilic guest molecules in a supramolecular polymer transient network.

Authors:  Maaike J G Schotman; Peter-Paul Fransen; Jiankang Song; Patricia Y W Dankers
Journal:  RSC Adv       Date:  2022-05-10       Impact factor: 4.036

4.  Modular mixing of benzene-1,3,5-tricarboxamide supramolecular hydrogelators allows tunable biomimetic hydrogels for control of cell aggregation in 3D.

Authors:  Shahzad Hafeez; Fiona R Passanha; Antonio J Feliciano; Floor A A Ruiter; Afonso Malheiro; René P M Lafleur; Nicholas M Matsumoto; Clemens van Blitterswijk; Lorenzo Moroni; Paul Wieringa; Vanessa L S LaPointe; Matthew B Baker
Journal:  Biomater Sci       Date:  2022-08-24       Impact factor: 7.590

5.  CTCF DNA-binding domain undergoes dynamic and selective protein-protein interactions.

Authors:  Rong Zhou; Kai Tian; Jie Huang; Wenjia Duan; Hongye Fu; Ying Feng; Hui Wang; Yongpeng Jiang; Yuanjun Li; Rui Wang; Jiazhi Hu; Hanhui Ma; Zhi Qi; Xiong Ji
Journal:  iScience       Date:  2022-08-24
  5 in total

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