Literature DB >> 28726107

Studying a novel ecdysone-dependent enhancer.

J V Nikolenko1, A N Krasnov2, M Y Mazina2, S G Georgieva2,3, N E Vorobyeva2.   

Abstract

Earlier [4], we developed a two-stage scheme of the activation of expression of the ecdysone cascade gene ftz-f1 in Drosophila melanogaster S2 cells. In the first intron of the ftz-f1 gene, we found a binding site for the transcription activator DHR3. In this work, we studied the properties of this genomic element: the change in the histone modification level at different stages of transcription activation were analyzed, and data indicating the interaction of the intron element with the promoter were obtained. Taken together, the results of this study indicate that the studied genomic element exhibits the properties of an enhancer and functions at the stage of active gene transcription.

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Year:  2017        PMID: 28726107     DOI: 10.1134/S160767291703022X

Source DB:  PubMed          Journal:  Dokl Biochem Biophys        ISSN: 1607-6729            Impact factor:   0.788


  9 in total

1.  Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.

Authors:  Nathaniel D Heintzman; Rhona K Stuart; Gary Hon; Yutao Fu; Christina W Ching; R David Hawkins; Leah O Barrera; Sara Van Calcar; Chunxu Qu; Keith A Ching; Wei Wang; Zhiping Weng; Roland D Green; Gregory E Crawford; Bing Ren
Journal:  Nat Genet       Date:  2007-02-04       Impact factor: 38.330

2.  SAYP interacts with DHR3 nuclear receptor and participates in ecdysone-dependent transcription regulation.

Authors:  Nadezhda E Vorobyeva; Julia V Nikolenko; Alexey N Krasnov; Julia L Kuzmina; Vladislav V Panov; Elena N Nabirochkina; Sofia G Georgieva; Yulii V Shidlovskii
Journal:  Cell Cycle       Date:  2011-06-01       Impact factor: 4.534

3.  The Drosophila nuclear receptors DHR3 and betaFTZ-F1 control overlapping developmental responses in late embryos.

Authors:  Anne-Françoise Ruaud; Geanette Lam; Carl S Thummel
Journal:  Development       Date:  2010-01       Impact factor: 6.868

4.  Genome-wide quantitative enhancer activity maps identified by STARR-seq.

Authors:  Cosmas D Arnold; Daniel Gerlach; Christoph Stelzer; Łukasz M Boryń; Martina Rath; Alexander Stark
Journal:  Science       Date:  2013-01-17       Impact factor: 47.728

5.  Lack of Transcription Triggers H3K27me3 Accumulation in the Gene Body.

Authors:  Masaki Hosogane; Ryo Funayama; Matsuyuki Shirota; Keiko Nakayama
Journal:  Cell Rep       Date:  2016-07-07       Impact factor: 9.423

6.  Chromatin immunoprecipitation indirect peaks highlight long-range interactions of insulator proteins and Pol II pausing.

Authors:  Jun Liang; Laurent Lacroix; Adrien Gamot; Suresh Cuddapah; Sophie Queille; Priscillia Lhoumaud; Pierre Lepetit; Pascal G P Martin; Jutta Vogelmann; Franck Court; Magali Hennion; Gaël Micas; Serge Urbach; Olivier Bouchez; Marcelo Nöllmann; Keji Zhao; Eldon Emberly; Olivier Cuvier
Journal:  Mol Cell       Date:  2014-01-30       Impact factor: 17.970

7.  SAYP and Brahma are important for 'repressive' and 'transient' Pol II pausing.

Authors:  Nadezhda E Vorobyeva; Julia V Nikolenko; Elena N Nabirochkina; Alexey N Krasnov; Yulii V Shidlovskii; Sofia G Georgieva
Journal:  Nucleic Acids Res       Date:  2012-05-25       Impact factor: 16.971

8.  Coordination of larval and prepupal gene expression by the DHR3 orphan receptor during Drosophila metamorphosis.

Authors:  G T Lam; C Jiang; C S Thummel
Journal:  Development       Date:  1997-05       Impact factor: 6.868

9.  Genome-wide identification of Drosophila dorso-ventral enhancers by differential histone acetylation analysis.

Authors:  Nina Koenecke; Jeff Johnston; Bjoern Gaertner; Malini Natarajan; Julia Zeitlinger
Journal:  Genome Biol       Date:  2016-09-27       Impact factor: 13.583

  9 in total

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