Literature DB >> 28726087

Population specific analysis of Yakut exomes.

A S Zlobin1,2, S Sh Sharapov3,4, V P Guryev5, M R Bevova5, Y A Tsepilov3,4, T M Sivtseva6, U A Boyarskih3,7, E A Sokolova3,7, Y S Aulchenko3,4, M L Filipenko3,7, V L Osakovsky6.   

Abstract

We studied the genetic diversity of the Yakut population using exome sequencing. We performed comparative analysis of the Yakut population and the populations that are included in the "1000 Genomes" project and we identified the alleles specific to the Yakut population. We showed, that the Yakuts population is a separate cluster between Europeans and East Asians.

Mesh：

Year:  2017        PMID： 28726087     DOI： 10.1134/S1607672917030188

Source DB:  PubMed          Journal:  Dokl Biochem Biophys        ISSN： 1607-6729            Impact factor:   0.788


  8 in total

1.  Robust relationship inference in genome-wide association studies.

Authors:  Ani Manichaikul; Josyf C Mychaleckyj; Stephen S Rich; Kathy Daly; Michèle Sale; Wei-Min Chen
Journal:  Bioinformatics       Date:  2010-10-05       Impact factor: 6.937

2.  Quality assessment of the human genome sequence.

Authors:  Jeremy Schmutz; Jeremy Wheeler; Jane Grimwood; Mark Dickson; Joan Yang; Chenier Caoile; Eva Bajorek; Stacey Black; Yee Man Chan; Mirian Denys; Julio Escobar; Dave Flowers; Dea Fotopulos; Carmen Garcia; Maria Gomez; Eidelyn Gonzales; Lauren Haydu; Frederick Lopez; Lucia Ramirez; James Retterer; Alex Rodriguez; Stephanie Rogers; Angelica Salazar; Ming Tsai; Richard M Myers
Journal:  Nature       Date:  2004-05-27       Impact factor: 49.962

3.  Runs of homozygosity in European populations.

Authors:  Ruth McQuillan; Anne-Louise Leutenegger; Rehab Abdel-Rahman; Christopher S Franklin; Marijana Pericic; Lovorka Barac-Lauc; Nina Smolej-Narancic; Branka Janicijevic; Ozren Polasek; Albert Tenesa; Andrew K Macleod; Susan M Farrington; Pavao Rudan; Caroline Hayward; Veronique Vitart; Igor Rudan; Sarah H Wild; Malcolm G Dunlop; Alan F Wright; Harry Campbell; James F Wilson
Journal:  Am J Hum Genet       Date:  2008-08-28       Impact factor: 11.025

4.  Fast gapped-read alignment with Bowtie 2.

Authors:  Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

5.  A framework for variation discovery and genotyping using next-generation DNA sequencing data.

Authors:  Mark A DePristo; Eric Banks; Ryan Poplin; Kiran V Garimella; Jared R Maguire; Christopher Hartl; Anthony A Philippakis; Guillermo del Angel; Manuel A Rivas; Matt Hanna; Aaron McKenna; Tim J Fennell; Andrew M Kernytsky; Andrey Y Sivachenko; Kristian Cibulskis; Stacey B Gabriel; David Altshuler; Mark J Daly
Journal:  Nat Genet       Date:  2011-04-10       Impact factor: 38.330

6.  On the Causes of Evolutionary Transition:Transversion Bias.

Authors:  Arlin Stoltzfus; Ryan W Norris
Journal:  Mol Biol Evol       Date:  2015-11-25       Impact factor: 16.240

7.  Global diversity, population stratification, and selection of human copy-number variation.

Authors:  Peter H Sudmant; Swapan Mallick; Bradley J Nelson; Fereydoun Hormozdiari; Niklas Krumm; John Huddleston; Bradley P Coe; Carl Baker; Susanne Nordenfelt; Michael Bamshad; Lynn B Jorde; Olga L Posukh; Hovhannes Sahakyan; W Scott Watkins; Levon Yepiskoposyan; M Syafiq Abdullah; Claudio M Bravi; Cristian Capelli; Tor Hervig; Joseph T S Wee; Chris Tyler-Smith; George van Driem; Irene Gallego Romero; Aashish R Jha; Sena Karachanak-Yankova; Draga Toncheva; David Comas; Brenna Henn; Toomas Kivisild; Andres Ruiz-Linares; Antti Sajantila; Ene Metspalu; Jüri Parik; Richard Villems; Elena B Starikovskaya; George Ayodo; Cynthia M Beall; Anna Di Rienzo; Michael F Hammer; Rita Khusainova; Elza Khusnutdinova; William Klitz; Cheryl Winkler; Damian Labuda; Mait Metspalu; Sarah A Tishkoff; Stanislav Dryomov; Rem Sukernik; Nick Patterson; David Reich; Evan E Eichler
Journal:  Science       Date:  2015-08-06       Impact factor: 47.728

8.  Autosomal and uniparental portraits of the native populations of Sakha (Yakutia): implications for the peopling of Northeast Eurasia.

Authors:  Sardana A Fedorova; Maere Reidla; Ene Metspalu; Mait Metspalu; Siiri Rootsi; Kristiina Tambets; Natalya Trofimova; Sergey I Zhadanov; Baharak Hooshiar Kashani; Anna Olivieri; Mikhail I Voevoda; Ludmila P Osipova; Fedor A Platonov; Mikhail I Tomsky; Elza K Khusnutdinova; Antonio Torroni; Richard Villems
Journal:  BMC Evol Biol       Date:  2013-06-19       Impact factor: 3.260
  8 in total

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