Literature DB >> 28724557

The Human Virome: Implications for Clinical Practice in Transplantation Medicine.

Susanna K Tan1, David A Relman2,3,4, Benjamin A Pinsky2,5.   

Abstract

Advances in DNA sequencing technology have provided an unprecedented opportunity to study the human virome. Transplant recipients and other immunocompromised hosts are at particular risk for developing virus-related pathology; thus, the impact of the virome on health and disease may be even more relevant in this population. Here, we discuss technical considerations in studying the human virome, the current literature on the virome in transplant recipients, and near-future applications of sequence-based findings that can further our understanding of viruses in transplantation medicine.
Copyright © 2017 American Society for Microbiology.

Entities:  

Keywords:  immunocompromised hosts; transplantation; virome

Mesh:

Year:  2017        PMID: 28724557      PMCID: PMC5625374          DOI: 10.1128/JCM.00489-17

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  80 in total

1.  Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome.

Authors:  David T Pride; Julia Salzman; Matthew Haynes; Forest Rohwer; Clara Davis-Long; Richard A White; Peter Loomer; Gary C Armitage; David A Relman
Journal:  ISME J       Date:  2011-12-08       Impact factor: 10.302

2.  Ribosomal RNA depletion for efficient use of RNA-seq capacity.

Authors:  Dominic O'Neil; Heike Glowatz; Martin Schlumpberger
Journal:  Curr Protoc Mol Biol       Date:  2013-07

3.  Association between plasma Torque teno virus level and chronic lung allograft dysfunction after lung transplantation.

Authors:  Irene Görzer; Peter Jaksch; Robert Strassl; Walter Klepetko; Elisabeth Puchhammer-Stöckl
Journal:  J Heart Lung Transplant       Date:  2016-10-21       Impact factor: 10.247

4.  VirusSeeker, a computational pipeline for virus discovery and virome composition analysis.

Authors:  Guoyan Zhao; Guang Wu; Efrem S Lim; Lindsay Droit; Siddharth Krishnamurthy; Dan H Barouch; Herbert W Virgin; David Wang
Journal:  Virology       Date:  2017-01-18       Impact factor: 3.616

5.  A new arenavirus in a cluster of fatal transplant-associated diseases.

Authors:  Gustavo Palacios; Julian Druce; Lei Du; Thomas Tran; Chris Birch; Thomas Briese; Sean Conlan; Phenix-Lan Quan; Jeffrey Hui; John Marshall; Jan Fredrik Simons; Michael Egholm; Christopher D Paddock; Wun-Ju Shieh; Cynthia S Goldsmith; Sherif R Zaki; Mike Catton; W Ian Lipkin
Journal:  N Engl J Med       Date:  2008-02-06       Impact factor: 91.245

6.  Spectrum of cancer risk among US solid organ transplant recipients.

Authors:  Eric A Engels; Ruth M Pfeiffer; Joseph F Fraumeni; Bertram L Kasiske; Ajay K Israni; Jon J Snyder; Robert A Wolfe; Nathan P Goodrich; A Rana Bayakly; Christina A Clarke; Glenn Copeland; Jack L Finch; Mary Lou Fleissner; Marc T Goodman; Amy Kahn; Lori Koch; Charles F Lynch; Margaret M Madeleine; Karen Pawlish; Chandrika Rao; Melanie A Williams; David Castenson; Michael Curry; Ruth Parsons; Gregory Fant; Monica Lin
Journal:  JAMA       Date:  2011-11-02       Impact factor: 157.335

Review 7.  Viral infections in immunocompromised patients.

Authors:  Janet Englund; Tobias Feuchtinger; Per Ljungman
Journal:  Biol Blood Marrow Transplant       Date:  2011-01       Impact factor: 5.742

Review 8.  Stable core virome despite variable microbiome after fecal transfer.

Authors:  Felix Broecker; Giancarlo Russo; Jochen Klumpp; Karin Moelling
Journal:  Gut Microbes       Date:  2016-12-09

9.  ViromeScan: a new tool for metagenomic viral community profiling.

Authors:  Simone Rampelli; Matteo Soverini; Silvia Turroni; Sara Quercia; Elena Biagi; Patrizia Brigidi; Marco Candela
Journal:  BMC Genomics       Date:  2016-03-01       Impact factor: 3.969

Review 10.  Viral metagenomics and blood safety.

Authors:  V Sauvage; M Eloit
Journal:  Transfus Clin Biol       Date:  2016-01-09       Impact factor: 1.406

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  1 in total

1.  Metagenomic Next-Generation Sequencing Reveals Individual Composition and Dynamics of Anelloviruses during Autologous Stem Cell Transplant Recipient Management.

Authors:  Antonin Bal; Clémentine Sarkozy; Laurence Josset; Valérie Cheynet; Guy Oriol; Jérémie Becker; Gaëlle Vilchez; Pierre Sesques; François Mallet; Alexandre Pachot; Florence Morfin; Bruno Lina; Gilles Salles; Fréderic Reynier; Sophie Trouillet-Assant; Karen Brengel-Pesce
Journal:  Viruses       Date:  2018-11-14       Impact factor: 5.048

  1 in total

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