Literature DB >> 28717021

Genetic and metabolic engineering in diatoms.

Weichao Huang1, Fayza Daboussi2.   

Abstract

Diatoms have attracted considerable attention due to their success in diverse environmental conditions, which probably is a consequence of their complex origins. Studies of their metabolism will provide insight into their adaptation capacity and are a prerequisite for metabolic engineering. Several years of investigation have led to the development of the genome engineering tools required for such studies, and a profusion of appropriate tools is now available for exploring and exploiting the metabolism of these organisms. Diatoms are highly prized in industrial biotechnology, due to both their richness in natural lipids and carotenoids and their ability to produce recombinant proteins, of considerable value in diverse markets. This review provides an overview of recent advances in genetic engineering methods for diatoms, from the development of gene expression cassettes and gene delivery methods, to cutting-edge genome-editing technologies. It also highlights the contributions of these rapid developments to both basic and applied research: they have improved our understanding of key physiological processes; and they have made it possible to modify the natural metabolism to favour the production of specific compounds or to produce new compounds for green chemistry and pharmaceutical applications.This article is part of the themed issue 'The peculiar carbon metabolism in diatoms'.
© 2017 The Author(s).

Entities:  

Keywords:  biotechnology; genetic engineering; metabolic engineering

Mesh:

Year:  2017        PMID: 28717021      PMCID: PMC5516120          DOI: 10.1098/rstb.2016.0411

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  86 in total

1.  Mutations altering the cleavage specificity of a homing endonuclease.

Authors:  Lenny M Seligman; Karen M Chisholm; Brett S Chevalier; Meggen S Chadsey; Samuel T Edwards; Jeremiah H Savage; Adeline L Veillet
Journal:  Nucleic Acids Res       Date:  2002-09-01       Impact factor: 16.971

Review 2.  The physiology and genetics of CO2 concentrating mechanisms in model diatoms.

Authors:  Brian M Hopkinson; Christopher L Dupont; Yusuke Matsuda
Journal:  Curr Opin Plant Biol       Date:  2016-04-04       Impact factor: 7.834

3.  Unicellular C4 photosynthesis in a marine diatom.

Authors:  J R Reinfelder; A M Kraepiel; F M Morel
Journal:  Nature       Date:  2000-10-26       Impact factor: 49.962

4.  Silencing UDP-glucose pyrophosphorylase gene in Phaeodactylum tricornutum affects carbon allocation.

Authors:  Bao-Hua Zhu; Hong-Ping Shi; Guan-Pin Yang; Na-Na Lv; Miao Yang; Ke-Hou Pan
Journal:  N Biotechnol       Date:  2015-07-08       Impact factor: 5.079

Review 5.  Prescribing diatom morphology: toward genetic engineering of biological nanomaterials.

Authors:  Nils Kröger
Journal:  Curr Opin Chem Biol       Date:  2007-11-26       Impact factor: 8.822

6.  FIRST INDUCED PLASTID GENOME MUTATIONS IN AN ALGA WITH SECONDARY PLASTIDS: psbA MUTATIONS IN THE DIATOM PHAEODACTYLUM TRICORNUTUM (BACILLARIOPHYCEAE) REVEAL CONSEQUENCES ON THE REGULATION OF PHOTOSYNTHESIS(1).

Authors:  Arne C Materna; Sabine Sturm; Peter G Kroth; Johann Lavaud
Journal:  J Phycol       Date:  2009-08       Impact factor: 2.923

7.  CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III.

Authors:  Elitza Deltcheva; Krzysztof Chylinski; Cynthia M Sharma; Karine Gonzales; Yanjie Chao; Zaid A Pirzada; Maria R Eckert; Jörg Vogel; Emmanuelle Charpentier
Journal:  Nature       Date:  2011-03-31       Impact factor: 49.962

8.  Inventory of fatty acid desaturases in the pennate diatom Phaeodactylum tricornutum.

Authors:  Lina-Juana Dolch; Eric Maréchal
Journal:  Mar Drugs       Date:  2015-03-16       Impact factor: 5.118

9.  Gene silencing in the marine diatom Phaeodactylum tricornutum.

Authors:  Valentina De Riso; Raffaella Raniello; Florian Maumus; Alessandra Rogato; Chris Bowler; Angela Falciatore
Journal:  Nucleic Acids Res       Date:  2009-05-31       Impact factor: 16.971

10.  Multisignal control of expression of the LHCX protein family in the marine diatom Phaeodactylum tricornutum.

Authors:  Lucilla Taddei; Giulio Rocco Stella; Alessandra Rogato; Benjamin Bailleul; Antonio Emidio Fortunato; Rossella Annunziata; Remo Sanges; Michael Thaler; Bernard Lepetit; Johann Lavaud; Marianne Jaubert; Giovanni Finazzi; Jean-Pierre Bouly; Angela Falciatore
Journal:  J Exp Bot       Date:  2016-05-25       Impact factor: 6.992

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  17 in total

Review 1.  The Synthetic Biology Toolkit for Photosynthetic Microorganisms.

Authors:  Konstantinos Vavitsas; Pierre Crozet; Marcos Hamborg Vinde; Fiona Davies; Stéphane D Lemaire; Claudia E Vickers
Journal:  Plant Physiol       Date:  2019-07-01       Impact factor: 8.340

Review 2.  Biological aspects and biotechnological potential of marine diatoms in relation to different light regimens.

Authors:  Costanza Baldisserotto; Alessandra Sabia; Lorenzo Ferroni; Simonetta Pancaldi
Journal:  World J Microbiol Biotechnol       Date:  2019-02-02       Impact factor: 3.312

Review 3.  Genome editing in diatoms: achievements and goals.

Authors:  Peter G Kroth; Atle M Bones; Fayza Daboussi; Maria I Ferrante; Marianne Jaubert; Misha Kolot; Marianne Nymark; Carolina Río Bártulos; Andrés Ritter; Monia T Russo; Manuel Serif; Per Winge; Angela Falciatore
Journal:  Plant Cell Rep       Date:  2018-08-23       Impact factor: 4.570

4.  Harnessing Solar Energy using Phototrophic Microorganisms: A Sustainable Pathway to Bioenergy, Biomaterials, and Environmental Solutions.

Authors:  Rahamat Ullah Tanvir; Jianying Zhang; Timothy Canter; Dick Chen; Jingrang Lu; Zhiqiang Hu
Journal:  Renew Sustain Energy Rev       Date:  2021-08-01       Impact factor: 16.799

Review 5.  A Large Silicon Pool in Small Picophytoplankton.

Authors:  Yuqiu Wei; Jun Sun
Journal:  Front Microbiol       Date:  2022-06-09       Impact factor: 6.064

Review 6.  Biomass from microalgae: the potential of domestication towards sustainable biofactories.

Authors:  Manuel Benedetti; Valeria Vecchi; Simone Barera; Luca Dall'Osto
Journal:  Microb Cell Fact       Date:  2018-11-10       Impact factor: 5.328

Review 7.  Applications of Microalgal Biotechnology for Disease Control in Aquaculture.

Authors:  Patai Charoonnart; Saul Purton; Vanvimon Saksmerprome
Journal:  Biology (Basel)       Date:  2018-04-12

8.  A Metabolomics Exploration of the Sexual Phase in the Marine Diatom Pseudo-nitzschia multistriata.

Authors:  Federica Fiorini; Camilla Borgonuovo; Maria Immacolata Ferrante; Mark Brönstrup
Journal:  Mar Drugs       Date:  2020-06-14       Impact factor: 5.118

9.  Blasticidin-S deaminase, a new selection marker for genetic transformation of the diatom Phaeodactylum tricornutum.

Authors:  Jochen M Buck; Carolina Río Bártulos; Ansgar Gruber; Peter G Kroth
Journal:  PeerJ       Date:  2018-11-14       Impact factor: 2.984

10.  One-step generation of multiple gene knock-outs in the diatom Phaeodactylum tricornutum by DNA-free genome editing.

Authors:  Manuel Serif; Gwendoline Dubois; Anne-Laure Finoux; Marie-Ange Teste; Denis Jallet; Fayza Daboussi
Journal:  Nat Commun       Date:  2018-09-25       Impact factor: 14.919

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