Literature DB >> 28716403

Unleashing the Potential of Public Genomic Resources to Find Parasite Genetic Data.

Ricardo Jorge Lopes1, Antonio Muñoz Mérida2, Miguel Carneiro2.   

Abstract

Genetic data generated by high-throughput sequencing and deposited in public databases are increasing exponentially. A substantial amount of these data is generated from wild animals, and can contain information from nontarget organisms, such as parasites. Methodologies that leverage this available information are warranted and can help to answer questions of general interest in parasitology.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Keywords:  bioinformatics; genomics; parasites; public databases

Mesh：

Year:  2017        PMID： 28716403     DOI： 10.1016/j.pt.2017.06.006

Source DB:  PubMed          Journal:  Trends Parasitol        ISSN： 1471-4922


  3 in total

1.  Metatranscriptomics yields new genomic resources and sensitive detection of infections for diverse blood parasites.

Authors:  Spencer C Galen; Janus Borner; Jessie L Williamson; Christopher C Witt; Susan L Perkins
Journal:  Mol Ecol Resour       Date:  2019-12-13       Impact factor: 7.090

2.  Using sheep genomes from diverse U.S. breeds to identify missense variants in genes affecting fecundity.

Authors:  Michael P Heaton; Timothy P L Smith; Bradley A Freking; Aspen M Workman; Gary L Bennett; Jacky K Carnahan; Theodore S Kalbfleisch
Journal:  F1000Res       Date:  2017-08-02

3.  Mining Public Metagenomes for Environmental Surveillance of Parasites: A Proof of Principle.

Authors:  Frits F J Franssen; Ingmar Janse; Dennis Janssen; Simone M Caccio; Paolo Vatta; Joke W B van der Giessen; Mark W J van Passel
Journal:  Front Microbiol       Date:  2021-06-30       Impact factor: 5.640
  3 in total

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