Literature DB >> 28711357

Effectiveness of the DNA barcoding approach for closely related conifers discrimination: A case study of the Pinus mugo complex.

Konrad Celiński1, Hanna Kijak2, Aleksandra Wojnicka-Półtorak2, Katarzyna Buczkowska-Chmielewska2, Joanna Sokołowska2, Ewa Chudzińska2.   

Abstract

DNA barcoding is a standard and efficient method, frequently used for identification, discrimination and discovery of new species. Although this approach is very useful for classifying the world's biodiversity, little is known about its usefulness in barcoding at lower taxonomic level and its discrimination rate for closely related species, like conifers. In this study, we compared the genetic variation of eight chloroplast DNA barcode regions (matK, rbcL, trnH-psbA, trnL-trnF, rpl20-rps18, trnV, ycf1, ycf2) in 17 conifers - three closely related pines from Pinus mugo complex and 14 more distant conifers representing two genera and four sections of the Pinaceae family. The discrimination rate for a single and for multiple DNA barcode regions analyzed in this study was estimated using the Tree-Building and PWG-Distance methods. The usefulness of the DNA barcoding approach for analyzing and resolving taxonomic inconsistency among closely related and more phylogenetically distant conifers was evaluated and discussed.
Copyright © 2017 Académie des sciences. Published by Elsevier Masson SAS. All rights reserved.

Entities:  

Keywords:  Barcoding; Chloroplast DNA; Species identification; Taxonomy; The Pinus mugo complex

Year:  2017        PMID: 28711357     DOI: 10.1016/j.crvi.2017.06.002

Source DB:  PubMed          Journal:  C R Biol        ISSN: 1631-0691            Impact factor:   1.583


  5 in total

1.  Characterization of the Complete Chloroplast Genomes of Buddleja colvilei and B. sessilifolia: Implications for the Taxonomy of Buddleja L.

Authors:  Jia Ge; Lei Cai; Gui-Qi Bi; Gao Chen; Weibang Sun
Journal:  Molecules       Date:  2018-05-23       Impact factor: 4.411

2.  Comparative Analysis of the Complete Chloroplast Genomes of Nine Paphiopedilum Species.

Authors:  Yin Sun; Peishan Zou; Nannan Jiang; Yifu Fang; Guofeng Liu
Journal:  Front Genet       Date:  2022-02-04       Impact factor: 4.599

3.  Assessment of ITS2 Region Relevance for Taxa Discrimination and Phylogenetic Inference among Pinaceae.

Authors:  Joanna Sokołowska; Hanna Fuchs; Konrad Celiński
Journal:  Plants (Basel)       Date:  2022-04-15

4.  Comparative Analysis of Chloroplast Genome in Saccharum spp. and Related Members of 'Saccharum Complex'.

Authors:  Sicheng Li; Weixing Duan; Jihan Zhao; Yanfen Jing; Mengfan Feng; Bowen Kuang; Ni Wei; Baoshan Chen; Xiping Yang
Journal:  Int J Mol Sci       Date:  2022-07-11       Impact factor: 6.208

5.  Evolutionary history of the mediterranean Pinus halepensis-brutia species complex using gene-resequencing and transcriptomic approaches.

Authors:  Sanna Olsson; Zaida Lorenzo; Mario Zabal-Aguirre; Andrea Piotti; Giovanni G Vendramin; Santiago C González-Martínez; Delphine Grivet
Journal:  Plant Mol Biol       Date:  2021-05-01       Impact factor: 4.076

  5 in total

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