Literature DB >> 28708412

Digital Holographic Microscopy, a Method for Detection of Microorganisms in Plume Samples from Enceladus and Other Icy Worlds.

Manuel Bedrossian1, Chris Lindensmith2, Jay L Nadeau1.   

Abstract

Detection of extant microbial life on Earth and elsewhere in the Solar System requires the ability to identify and enumerate micrometer-scale, essentially featureless cells. On Earth, bacteria are usually enumerated by culture plating or epifluorescence microscopy. Culture plates require long incubation times and can only count culturable strains, and epifluorescence microscopy requires extensive staining and concentration of the sample and instrumentation that is not readily miniaturized for space. Digital holographic microscopy (DHM) represents an alternative technique with no moving parts and higher throughput than traditional microscopy, making it potentially useful in space for detection of extant microorganisms provided that sufficient numbers of cells can be collected. Because sample collection is expected to be the limiting factor for space missions, especially to outer planets, it is important to quantify the limits of detection of any proposed technique for extant life detection. Here we use both laboratory and field samples to measure the limits of detection of an off-axis digital holographic microscope (DHM). A statistical model is used to estimate any instrument's probability of detection at various bacterial concentrations based on the optical performance characteristics of the instrument, as well as estimate the confidence interval of detection. This statistical model agrees well with the limit of detection of 103 cells/mL that was found experimentally with laboratory samples. In environmental samples, active cells were immediately evident at concentrations of 104 cells/mL. Published estimates of cell densities for Enceladus plumes yield up to 104 cells/mL, which are well within the off-axis DHM's limits of detection to confidence intervals greater than or equal to 95%, assuming sufficient sample volumes can be collected. The quantitative phase imaging provided by DHM allowed minerals to be distinguished from cells. Off-axis DHM's ability for rapid low-level bacterial detection and counting shows its viability as a technique for detection of extant microbial life provided that the cells can be captured intact and delivered to the sample chamber in a sufficient volume of liquid for imaging. Key Words: In situ life detection-Extant microorganisms-Holographic microscopy-Ocean Worlds-Enceladus-Imaging. Astrobiology 17, 913-925.

Entities:  

Year:  2017        PMID: 28708412      PMCID: PMC5610429          DOI: 10.1089/ast.2016.1616

Source DB:  PubMed          Journal:  Astrobiology        ISSN: 1557-8070            Impact factor:   4.335


  37 in total

1.  Simultaneous fluorescent gram staining and activity assessment of activated sludge bacteria.

Authors:  Scott Forster; Jason R Snape; Hilary M Lappin-Scott; Jonathan Porter
Journal:  Appl Environ Microbiol       Date:  2002-10       Impact factor: 4.792

2.  Measurement of the integral refractive index and dynamic cell morphometry of living cells with digital holographic microscopy.

Authors:  Benjamin Rappaz; Pierre Marquet; Etienne Cuche; Yves Emery; Christian Depeursinge; Pierre Magistretti
Journal:  Opt Express       Date:  2005-11-14       Impact factor: 3.894

3.  Fluorescence microscopy as a tool for in situ life detection.

Authors:  J L Nadeau; N N Perreault; T D Niederberger; L G Whyte; H J Sun; R Leon
Journal:  Astrobiology       Date:  2008-08       Impact factor: 4.335

4.  Simultaneous cell morphometry and refractive index measurement with dual-wavelength digital holographic microscopy and dye-enhanced dispersion of perfusion medium.

Authors:  Benjamin Rappaz; Florian Charrière; Christian Depeursinge; Pierre J Magistretti; Pierre Marquet
Journal:  Opt Lett       Date:  2008-04-01       Impact factor: 3.776

5.  Bringing the ocean into the laboratory to probe the chemical complexity of sea spray aerosol.

Authors:  Kimberly A Prather; Timothy H Bertram; Vicki H Grassian; Grant B Deane; M Dale Stokes; Paul J Demott; Lihini I Aluwihare; Brian P Palenik; Farooq Azam; John H Seinfeld; Ryan C Moffet; Mario J Molina; Christopher D Cappa; Franz M Geiger; Gregory C Roberts; Lynn M Russell; Andrew P Ault; Jonas Baltrusaitis; Douglas B Collins; Craig E Corrigan; Luis A Cuadra-Rodriguez; Carlena J Ebben; Sara D Forestieri; Timothy L Guasco; Scott P Hersey; Michelle J Kim; William F Lambert; Robin L Modini; Wilton Mui; Byron E Pedler; Matthew J Ruppel; Olivia S Ryder; Nathan G Schoepp; Ryan C Sullivan; Defeng Zhao
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-25       Impact factor: 11.205

6.  Comparison of blue nucleic acid dyes for flow cytometric enumeration of bacteria in aquatic systems.

Authors:  P Lebaron; N Parthuisot; P Catala
Journal:  Appl Environ Microbiol       Date:  1998-05       Impact factor: 4.792

Review 7.  Microbial Morphology and Motility as Biosignatures for Outer Planet Missions.

Authors:  Jay Nadeau; Chris Lindensmith; Jody W Deming; Vicente I Fernandez; Roman Stocker
Journal:  Astrobiology       Date:  2016-08-23       Impact factor: 4.335

8.  Could It Be Snowing Microbes on Enceladus? Assessing Conditions in Its Plume and Implications for Future Missions.

Authors:  Carolyn C Porco; Luke Dones; Colin Mitchell
Journal:  Astrobiology       Date:  2017-08-11       Impact factor: 4.335

9.  Comparison of acridine orange and Gram stains for detection of microorganisms in cerebrospinal fluid and other clinical specimens.

Authors:  B A Lauer; L B Reller; S Mirrett
Journal:  J Clin Microbiol       Date:  1981-08       Impact factor: 5.948

10.  A Submersible, Off-Axis Holographic Microscope for Detection of Microbial Motility and Morphology in Aqueous and Icy Environments.

Authors:  Christian A Lindensmith; Stephanie Rider; Manuel Bedrossian; J Kent Wallace; Eugene Serabyn; G Max Showalter; Jody W Deming; Jay L Nadeau
Journal:  PLoS One       Date:  2016-01-26       Impact factor: 3.240

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  5 in total

1.  Could It Be Snowing Microbes on Enceladus? Assessing Conditions in Its Plume and Implications for Future Missions.

Authors:  Carolyn C Porco; Luke Dones; Colin Mitchell
Journal:  Astrobiology       Date:  2017-08-11       Impact factor: 4.335

2.  Science Objectives for Flagship-Class Mission Concepts for the Search for Evidence of Life at Enceladus.

Authors:  Shannon M MacKenzie; Marc Neveu; Alfonso F Davila; Jonathan I Lunine; Morgan L Cable; Charity M Phillips-Lander; Jennifer L Eigenbrode; J Hunter Waite; Kate L Craft; Jason D Hofgartner; Chris P McKay; Christopher R Glein; Dana Burton; Samuel P Kounaves; Richard A Mathies; Steven D Vance; Michael J Malaska; Robert Gold; Christopher R German; Krista M Soderlund; Peter Willis; Caroline Freissinet; Alfred S McEwen; John Robert Brucato; Jean-Pierre P de Vera; Tori M Hoehler; Jennifer Heldmann
Journal:  Astrobiology       Date:  2022-03-15       Impact factor: 4.045

3.  A Community Grows around the Geysering World of Enceladus.

Authors:  Carolyn C Porco
Journal:  Astrobiology       Date:  2017-07-25       Impact factor: 4.335

4.  Noise Filtering Method of Digital Holographic Microscopy for Obtaining an Accurate Three-Dimensional Profile of Object Using a Windowed Sideband Array (WiSA).

Authors:  Hyun-Woo Kim; Myungjin Cho; Min-Chul Lee
Journal:  Sensors (Basel)       Date:  2022-06-27       Impact factor: 3.847

5.  The Ladder of Life Detection.

Authors:  Marc Neveu; Lindsay E Hays; Mary A Voytek; Michael H New; Mitchell D Schulte
Journal:  Astrobiology       Date:  2018-06-04       Impact factor: 4.335

  5 in total

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