Literature DB >> 28708278

Whole-exome sequencing is a valuable diagnostic tool for inherited peripheral neuropathies: Outcomes from a cohort of 50 families.

T Hartley1, J D Wagner1, J Warman-Chardon1,2, M Tétreault3, L Brady4, S Baker5, M Tarnopolsky4, P R Bourque6, J S Parboosingh7, C Smith7, B McInnes7, A M Innes7,8, F Bernier7,8, C J Curry9, G Yoon10, G A Horvath11, E Bareke3, M Gillespie1, J Majewski3, D E Bulman1, D A Dyment1,2, K M Boycott1,2.   

Abstract

The inherited peripheral neuropathies (IPNs) are characterized by marked clinical and genetic heterogeneity and include relatively frequent presentations such as Charcot-Marie-Tooth disease and hereditary motor neuropathy, as well as more rare conditions where peripheral neuropathy is associated with additional features. There are over 250 genes known to cause IPN-related disorders but it is estimated that in approximately 50% of affected individuals a molecular diagnosis is not achieved. In this study, we examine the diagnostic utility of whole-exome sequencing (WES) in a cohort of 50 families with 1 or more affected individuals with a molecularly undiagnosed IPN with or without additional features. Pathogenic or likely pathogenic variants in genes known to cause IPN were identified in 24% (12/50) of the families. A further 22% (11/50) of families carried sequence variants in IPN genes in which the significance remains unclear. An additional 12% (6/50) of families had variants in novel IPN candidate genes, 3 of which have been published thus far as novel discoveries (KIF1A, TBCK, and MCM3AP). This study highlights the use of WES in the molecular diagnostic approach of highly heterogeneous disorders, such as IPNs, places it in context of other published neuropathy cohorts, while further highlighting associated benefits for discovery.
© 2017 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Entities:  

Keywords:  diagnostic utility; hereditary motor and sensory neuropathy; inherited peripheral neuropathy; next-generation sequencing; whole-exome sequencing

Mesh:

Substances:

Year:  2017        PMID: 28708278     DOI: 10.1111/cge.13101

Source DB:  PubMed          Journal:  Clin Genet        ISSN: 0009-9163            Impact factor:   4.438


  19 in total

1.  Biallelic sequence variants in INTS1 in patients with developmental delays, cataracts, and craniofacial anomalies.

Authors:  Max Krall; Stephanie Htun; Rhonda E Schnur; Alice S Brooks; Laura Baker; Alejandra de Alba Campomanes; Ryan E Lamont; Karen W Gripp; Dina Schneidman-Duhovny; A Micheil Innes; Grazia M S Mancini; Anne M Slavotinek
Journal:  Eur J Hum Genet       Date:  2019-01-08       Impact factor: 4.246

Review 2.  Paediatric genomics: diagnosing rare disease in children.

Authors:  Caroline F Wright; David R FitzPatrick; Helen V Firth
Journal:  Nat Rev Genet       Date:  2018-02-05       Impact factor: 53.242

3.  Prediction of risk-associated genes and high-risk liver cancer patients from their mutation profile: benchmarking of mutation calling techniques.

Authors:  Sumeet Patiyal; Anjali Dhall; Gajendra P S Raghava
Journal:  Biol Methods Protoc       Date:  2022-05-27

4.  Exome Sequencing in Children.

Authors:  Elisa A Mahler; Jessika Johannsen; Konstantinos Tsiakas; Katja Kloth; Sabine Lüttgen; Chris Mühlhausen; Bader Alhaddad; Tobias B Haack; Tim M Strom; Fanny Kortüm; Thomas Meitinger; Ania C Muntau; René Santer; Christian Kubisch; Davor Lessel; Jonas Denecke; Maja Hempel
Journal:  Dtsch Arztebl Int       Date:  2019-03-22       Impact factor: 5.594

Review 5.  Next-generation sequencing in Charcot-Marie-Tooth disease: opportunities and challenges.

Authors:  Menelaos Pipis; Alexander M Rossor; Matilde Laura; Mary M Reilly
Journal:  Nat Rev Neurol       Date:  2019-10-03       Impact factor: 42.937

6.  Homozygous boricua TBCK mutation causes neurodegeneration and aberrant autophagy.

Authors:  Xilma R Ortiz-González; Jesus A Tintos-Hernández; Kierstin Keller; Xueli Li; A Reghan Foley; Diana X Bharucha-Goebel; Sudha K Kessler; Sabrina W Yum; Peter B Crino; Miao He; Douglas C Wallace; Carsten G Bönnemann
Journal:  Ann Neurol       Date:  2018-01       Impact factor: 11.274

Review 7.  The role of gene variants in the pathogenesis of neurodegenerative disorders as revealed by next generation sequencing studies: a review.

Authors:  Shirley Yin-Yu Pang; Kay-Cheong Teo; Jacob Shujui Hsu; Richard Shek-Kwan Chang; Miaoxin Li; Pak-Chung Sham; Shu-Leong Ho
Journal:  Transl Neurodegener       Date:  2017-10-06       Impact factor: 8.014

8.  Clinical exome sequencing in France and Quebec: what are the challenges? What does the future hold?

Authors:  Gabrielle Bertier; Yann Joly
Journal:  Life Sci Soc Policy       Date:  2018-08-01

Review 9.  Structural variations causing inherited peripheral neuropathies: A paradigm for understanding genomic organization, chromatin interactions, and gene dysregulation.

Authors:  Anthony N Cutrupi; Megan H Brewer; Garth A Nicholson; Marina L Kennerson
Journal:  Mol Genet Genomic Med       Date:  2018-03-23       Impact factor: 2.183

10.  Molecular diagnosis of inherited peripheral neuropathies by targeted next-generation sequencing: molecular spectrum delineation.

Authors:  Juliette Bacquet; Tanya Stojkovic; Amandine Boyer; Nathalie Martini; Frédérique Audic; Brigitte Chabrol; Emmanuelle Salort-Campana; Emilien Delmont; Jean-Pierre Desvignes; Annie Verschueren; Shahram Attarian; Annabelle Chaussenot; Valérie Delague; Nicolas Levy; Nathalie Bonello-Palot
Journal:  BMJ Open       Date:  2018-10-28       Impact factor: 2.692

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.