Literature DB >> 28706963

CRISPR/Cas9 Editing of the Bacillus subtilis Genome.

Peter E Burby1, Lyle A Simmons1.   

Abstract

A fundamental procedure for most modern biologists is the genetic manipulation of the organism under study. Although many different methods for editing bacterial genomes have been used in laboratories for decades, the adaptation of CRISPR/Cas9 technology to bacterial genetics has allowed researchers to manipulate bacterial genomes with unparalleled facility. CRISPR/Cas9 has allowed for genome edits to be more precise, while also increasing the efficiency of transferring mutations into a variety of genetic backgrounds. As a result, the advantages are realized in tractable organisms and organisms that have been refractory to genetic manipulation. Here, we describe our method for editing the genome of the bacterium Bacillus subtilis. Our method is highly efficient, resulting in precise, markerless mutations. Further, after generating the editing plasmid, the mutation can be quickly introduced into several genetic backgrounds, greatly increasing the speed with which genetic analyses may be performed.

Entities:  

Keywords:  Bacillus subtilis; CRISPR; Cas9; Gene deletion; Genome editing; Point mutation

Year:  2017        PMID: 28706963      PMCID: PMC5502775          DOI: 10.21769/BioProtoc.2272

Source DB:  PubMed          Journal:  Bio Protoc        ISSN: 2331-8325


  12 in total

1.  Enhancements and modifications of primer design program Primer3.

Authors:  Triinu Koressaar; Maido Remm
Journal:  Bioinformatics       Date:  2007-03-22       Impact factor: 6.937

2.  MinJ (YvjD) is a topological determinant of cell division in Bacillus subtilis.

Authors:  Joyce E Patrick; Daniel B Kearns
Journal:  Mol Microbiol       Date:  2008-10-02       Impact factor: 3.501

Review 3.  Expanding the Biologist's Toolkit with CRISPR-Cas9.

Authors:  Samuel H Sternberg; Jennifer A Doudna
Journal:  Mol Cell       Date:  2015-05-21       Impact factor: 17.970

4.  MutS2 Promotes Homologous Recombination in Bacillus subtilis.

Authors:  Peter E Burby; Lyle A Simmons
Journal:  J Bacteriol       Date:  2016-12-28       Impact factor: 3.490

5.  New vector for efficient allelic replacement in naturally nontransformable, low-GC-content, gram-positive bacteria.

Authors:  Maryvonne Arnaud; Arnaud Chastanet; Michel Débarbouillé
Journal:  Appl Environ Microbiol       Date:  2004-11       Impact factor: 4.792

6.  Plasmids for ectopic integration in Bacillus subtilis.

Authors:  A M Guérout-Fleury; N Frandsen; P Stragier
Journal:  Gene       Date:  1996-11-21       Impact factor: 3.688

7.  A new mutation delivery system for genome-scale approaches in Bacillus subtilis.

Authors:  Céline Fabret; S Dusko Ehrlich; Philippe Noirot
Journal:  Mol Microbiol       Date:  2002-10       Impact factor: 3.501

8.  Enzymatic assembly of overlapping DNA fragments.

Authors:  Daniel G Gibson
Journal:  Methods Enzymol       Date:  2011       Impact factor: 1.600

9.  OligoCalc: an online oligonucleotide properties calculator.

Authors:  Warren A Kibbe
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

10.  RNA-guided editing of bacterial genomes using CRISPR-Cas systems.

Authors:  Wenyan Jiang; David Bikard; David Cox; Feng Zhang; Luciano A Marraffini
Journal:  Nat Biotechnol       Date:  2013-01-29       Impact factor: 54.908

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  11 in total

1.  Diadenosine tetraphosphate regulates biosynthesis of GTP in Bacillus subtilis.

Authors:  Pietro I Giammarinaro; Megan K M Young; Wieland Steinchen; Christopher-Nils Mais; Georg Hochberg; Jin Yang; David M Stevenson; Daniel Amador-Noguez; Anja Paulus; Jue D Wang; Gert Bange
Journal:  Nat Microbiol       Date:  2022-08-11       Impact factor: 30.964

2.  Genome Editing Methods for Bacillus subtilis.

Authors:  Katherine J Wozniak; Lyle A Simmons
Journal:  Methods Mol Biol       Date:  2022

3.  Basis of narrow-spectrum activity of fidaxomicin on Clostridioides difficile.

Authors:  Xinyun Cao; Hande Boyaci; James Chen; Yu Bao; Robert Landick; Elizabeth A Campbell
Journal:  Nature       Date:  2022-04-06       Impact factor: 69.504

4.  The Bacillus subtilis PriA Winged Helix Domain Is Critical for Surviving DNA Damage.

Authors:  Lindsay A Matthews; Lyle A Simmons
Journal:  J Bacteriol       Date:  2022-01-10       Impact factor: 3.476

5.  Cryptic protein interactions regulate DNA replication initiation.

Authors:  Lindsay A Matthews; Lyle A Simmons
Journal:  Mol Microbiol       Date:  2018-10-21       Impact factor: 3.501

6.  DNA damage checkpoint activation affects peptidoglycan synthesis and late divisome components in Bacillus subtilis.

Authors:  Emily A Masser; Peter E Burby; Wayne D Hawkins; Brooke R Gustafson; Justin S Lenhart; Lyle A Simmons
Journal:  Mol Microbiol       Date:  2021-06-25       Impact factor: 3.979

7.  Multiple integration of the gene ganA into the Bacillus subtilis chromosome for enhanced β-galactosidase production using the CRISPR/Cas9 system.

Authors:  Hildegard Watzlawick; Josef Altenbuchner
Journal:  AMB Express       Date:  2019-09-30       Impact factor: 3.298

Review 8.  Class 2 CRISPR/Cas: an expanding biotechnology toolbox for and beyond genome editing.

Authors:  Yuyi Tang; Yan Fu
Journal:  Cell Biosci       Date:  2018-11-12       Impact factor: 7.133

9.  The nucleotide pGpp acts as a third alarmone in Bacillus, with functions distinct from those of (p) ppGpp.

Authors:  Jin Yang; Brent W Anderson; Asan Turdiev; Husan Turdiev; David M Stevenson; Daniel Amador-Noguez; Vincent T Lee; Jue D Wang
Journal:  Nat Commun       Date:  2020-10-23       Impact factor: 14.919

10.  A Simplified Method for CRISPR-Cas9 Engineering of Bacillus subtilis.

Authors:  Ankita J Sachla; Alexander J Alfonso; John D Helmann
Journal:  Microbiol Spectr       Date:  2021-09-15
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