Literature DB >> 28702663

Tuning phase and aging of DNA hydrogels through molecular design.

Dan T Nguyen1, Omar A Saleh.   

Abstract

The programmable, sequence-dependent hybridization of DNA has spurred the development of DNA hydrogels, polymer networks that swell in water and are comprised either entirely or partially of DNA. Specific applications require hydrogels of particular structure for optimal functionality. Here, we use self-assembling, multi-valent DNA nanostars to examine how hydrogel structure is influenced by the non-equilibrium dynamics of its interacting components. We show that hydrogel aging kinetics - from an arrested, solid-like percolated network to an equilibrium, phase-separated liquid analogous to coacervates - are modulated by DNA hybridization strength and ion-specific nanostar internal flexibility. Together, our results demonstrate strategies to control hydrogel kinetic phenomena, and thus the hydrogel structure, through the rational design of gel-forming elements and solvent conditions.

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Year:  2017        PMID: 28702663     DOI: 10.1039/c7sm00557a

Source DB:  PubMed          Journal:  Soft Matter        ISSN: 1744-683X            Impact factor:   3.679


  12 in total

1.  Increasing valence pushes DNA nanostar networks to the isostatic point.

Authors:  Nathaniel Conrad; Tynan Kennedy; Deborah K Fygenson; Omar A Saleh
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-26       Impact factor: 11.205

2.  Enzymatic degradation of liquid droplets of DNA is modulated near the phase boundary.

Authors:  Omar A Saleh; Byoung-Jin Jeon; Tim Liedl
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-29       Impact factor: 11.205

3.  Optical Tweezers Microrheology: From the Basics to Advanced Techniques and Applications.

Authors:  Rae M Robertson-Anderson
Journal:  ACS Macro Lett       Date:  2018-08-05       Impact factor: 7.015

4.  Formation of non-base-pairing DNA microgels using directed phase transition of amphiphilic monomers.

Authors:  Chanseok Lee; Sungho Do; Jae Young Lee; Minju Kim; Sang Moon Kim; Yongdae Shin; Do-Nyun Kim
Journal:  Nucleic Acids Res       Date:  2022-04-22       Impact factor: 19.160

5.  tRNA sequences can assemble into a replicator.

Authors:  Alexandra Kühnlein; Simon A Lanzmich; Dieter Braun
Journal:  Elife       Date:  2021-03-02       Impact factor: 8.140

Review 6.  Physics of compartmentalization: How phase separation and signaling shape membrane and organelle identity.

Authors:  Elisa Floris; Andrea Piras; Luca Dall'Asta; Andrea Gamba; Emilio Hirsch; Carlo C Campa
Journal:  Comput Struct Biotechnol J       Date:  2021-05-24       Impact factor: 7.271

7.  Sequence-based engineering of dynamic functions of micrometer-sized DNA droplets.

Authors:  Yusuke Sato; Tetsuro Sakamoto; Masahiro Takinoue
Journal:  Sci Adv       Date:  2020-06-03       Impact factor: 14.136

8.  Microrheology of DNA hydrogel gelling and melting on cooling.

Authors:  Javier Fernandez-Castanon; Silvio Bianchi; Filippo Saglimbeni; Roberto Di Leonardo; Francesco Sciortino
Journal:  Soft Matter       Date:  2018-06-28       Impact factor: 3.679

9.  Enhanced diffusion by binding to the crosslinks of a polymer gel.

Authors:  Carl P Goodrich; Michael P Brenner; Katharina Ribbeck
Journal:  Nat Commun       Date:  2018-10-19       Impact factor: 14.919

10.  Gelling without Structuring: A SAXS Study of the Interactions among DNA Nanostars.

Authors:  Francesco Spinozzi; Maria Grazia Ortore; Giovanni Nava; Francesca Bomboi; Federica Carducci; Heinz Amenitsch; Tommaso Bellini; Francesco Sciortino; Paolo Mariani
Journal:  Langmuir       Date:  2020-08-25       Impact factor: 3.882

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