Literature DB >> 28695852

The multidrug-resistance transporter MdfA from Escherichia coli: crystallization and X-ray diffraction analysis.

Kumar Nagarathinam1, Frank Jaenecke1, Yoshiko Nakada-Nakura2, Yunhon Hotta2, Kehong Liu2, So Iwata2, Milton T Stubbs1, Norimichi Nomura2, Mikio Tanabe1.   

Abstract

The active efflux of antibiotics by multidrug-resistance (MDR) transporters is a major pathway of drug resistance and complicates the clinical treatment of bacterial infections. MdfA is a member of the major facilitator superfamily (MFS) from Escherichia coli and provides resistance to a wide variety of dissimilar toxic compounds, including neutral, cationic and zwitterionic substances. The 12-transmembrane-helix MdfA was expressed as a GFP-octahistidine fusion protein with a TEV protease cleavage site. Following tag removal, MdfA was purified using two chromatographic steps, complexed with a Fab fragment and further purified using size-exclusion chromatography. MdfA and MdfA-Fab complexes were subjected to both vapour-diffusion and lipidic cubic phase (LCP) crystallization techniques. Vapour-diffusion-grown crystals were of type II, with poor diffraction behaviour and weak crystal contacts. LCP lipid screening resulted in type I crystals that diffracted to 3.4 Å resolution and belonged to the hexagonal space group P6122.

Entities:  

Keywords:  MFS transporter; antibody fragment; crystallization; lipidic cubic phase; membrane protein; multidrug resistance

Mesh:

Substances:

Year:  2017        PMID: 28695852      PMCID: PMC5505248          DOI: 10.1107/S2053230X17008500

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  25 in total

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Review 3.  MdfA from Escherichia coli, a model protein for studying secondary multidrug transport.

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4.  A monoclonal antibody for G protein-coupled receptor crystallography.

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Journal:  Nat Methods       Date:  2007-10-21       Impact factor: 28.547

5.  Inference of macromolecular assemblies from crystalline state.

Authors:  Evgeny Krissinel; Kim Henrick
Journal:  J Mol Biol       Date:  2007-05-13       Impact factor: 5.469

6.  Green fluorescent protein as an indicator to monitor membrane protein overexpression in Escherichia coli.

Authors:  D E Drew; G von Heijne; P Nordlund; J W de Gier
Journal:  FEBS Lett       Date:  2001-10-26       Impact factor: 4.124

7.  A single membrane-embedded negative charge is critical for recognizing positively charged drugs by the Escherichia coli multidrug resistance protein MdfA.

Authors:  R Edgar; E Bibi
Journal:  EMBO J       Date:  1999-02-15       Impact factor: 11.598

8.  GFP-based optimization scheme for the overexpression and purification of eukaryotic membrane proteins in Saccharomyces cerevisiae.

Authors:  David Drew; Simon Newstead; Yo Sonoda; Hyun Kim; Gunnar von Heijne; So Iwata
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491

9.  Alkalitolerance: a biological function for a multidrug transporter in pH homeostasis.

Authors:  Oded Lewinson; Etana Padan; Eitan Bibi
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-15       Impact factor: 11.205

10.  Microscale fluorescent thermal stability assay for membrane proteins.

Authors:  Alexander I Alexandrov; Mauro Mileni; Ellen Y T Chien; Michael A Hanson; Raymond C Stevens
Journal:  Structure       Date:  2008-03       Impact factor: 5.006

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  3 in total

1.  Probing the solution structure of the E. coli multidrug transporter MdfA using DEER distance measurements with nitroxide and Gd(III) spin labels.

Authors:  Eliane H Yardeni; Thorsten Bahrenberg; Richard A Stein; Smriti Mishra; Elia Zomot; Bim Graham; Kellie L Tuck; Thomas Huber; Eitan Bibi; Hassane S Mchaourab; Daniella Goldfarb
Journal:  Sci Rep       Date:  2019-08-29       Impact factor: 4.379

Review 2.  Membrane Efflux Pumps of Pathogenic Vibrio Species: Role in Antimicrobial Resistance and Virulence.

Authors:  Jerusha Stephen; Manjusha Lekshmi; Parvathi Ammini; Sanath H Kumar; Manuel F Varela
Journal:  Microorganisms       Date:  2022-02-07

3.  Outward open conformation of a Major Facilitator Superfamily multidrug/H+ antiporter provides insights into switching mechanism.

Authors:  Kumar Nagarathinam; Yoshiko Nakada-Nakura; Christoph Parthier; Tohru Terada; Narinobu Juge; Frank Jaenecke; Kehong Liu; Yunhon Hotta; Takaaki Miyaji; Hiroshi Omote; So Iwata; Norimichi Nomura; Milton T Stubbs; Mikio Tanabe
Journal:  Nat Commun       Date:  2018-10-01       Impact factor: 14.919

  3 in total

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