Literature DB >> 28695504

Detecting Protein ADP-Ribosylation Using a Clickable Aminooxy Probe.

Rory K Morgan1, Michael S Cohen2.   

Abstract

ADP-ribosylation, a posttranslational modification catalyzed by a family of enzymes known as poly(ADP-ribose) polymerases (PARPs, 17 in humans), regulates diverse cellular processes. To aid in understanding the functions of ADP-ribosylation in cells, we developed a clickable aminooxy probe, AO-alkyne, which detects ADP-ribosylation of acidic amino acids. AO-alkyne can be used to detect auto-ADP-ribosylation of PARP10 in cells following Cu-catalyzed click conjugation to an azide reporter. This method can be extended to other PARP family members that catalyze ADP-ribosylation on acidic amino acids, providing a convenient and direct readout of PARP activity in cells.

Entities:  

Keywords:  ADP-ribosylation; Bioconjugation; Click chemistry; Oxime ligation; PARPs

Mesh:

Substances:

Year:  2017        PMID: 28695504      PMCID: PMC5920556          DOI: 10.1007/978-1-4939-6993-7_6

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  12 in total

1.  Substrate-assisted catalysis by PARP10 limits its activity to mono-ADP-ribosylation.

Authors:  Henning Kleine; Elzbieta Poreba; Krzysztof Lesniewicz; Paul O Hassa; Michael O Hottiger; David W Litchfield; Brian H Shilton; Bernhard Lüscher
Journal:  Mol Cell       Date:  2008-10-10       Impact factor: 17.970

2.  A Clickable Aminooxy Probe for Monitoring Cellular ADP-Ribosylation.

Authors:  Rory K Morgan; Michael S Cohen
Journal:  ACS Chem Biol       Date:  2015-05-27       Impact factor: 5.100

3.  Dark Hydrazone Fluorescence Labeling Agents Enable Imaging of Cellular Aldehydic Load.

Authors:  Lik Hang Yuen; Nivedita S Saxena; Hyun Shin Park; Kenneth Weinberg; Eric T Kool
Journal:  ACS Chem Biol       Date:  2016-06-24       Impact factor: 5.100

4.  Family-wide chemical profiling and structural analysis of PARP and tankyrase inhibitors.

Authors:  Elisabet Wahlberg; Tobias Karlberg; Ekaterina Kouznetsova; Natalia Markova; Antonio Macchiarulo; Ann-Gerd Thorsell; Ewa Pol; Åsa Frostell; Torun Ekblad; Delal Öncü; Björn Kull; Graeme Michael Robertson; Roberto Pellicciari; Herwig Schüler; Johan Weigelt
Journal:  Nat Biotechnol       Date:  2012-02-19       Impact factor: 54.908

5.  Family-wide analysis of poly(ADP-ribose) polymerase activity.

Authors:  Sejal Vyas; Ivan Matic; Lilen Uchima; Jenny Rood; Roko Zaja; Ronald T Hay; Ivan Ahel; Paul Chang
Journal:  Nat Commun       Date:  2014-07-21       Impact factor: 14.919

6.  Clickable NAD analogues for labeling substrate proteins of poly(ADP-ribose) polymerases.

Authors:  Hong Jiang; Jun Hyun Kim; Kristine M Frizzell; W Lee Kraus; Hening Lin
Journal:  J Am Chem Soc       Date:  2010-07-14       Impact factor: 15.419

Review 7.  New insights into the molecular and cellular functions of poly(ADP-ribose) and PARPs.

Authors:  Bryan A Gibson; W Lee Kraus
Journal:  Nat Rev Mol Cell Biol       Date:  2012-06-20       Impact factor: 94.444

8.  Identifying Direct Protein Targets of Poly-ADP-Ribose Polymerases (PARPs) Using Engineered PARP Variants-Orthogonal Nicotinamide Adenine Dinucleotide (NAD+) Analog Pairs.

Authors:  Ian Carter-O'Connell; Michael S Cohen
Journal:  Curr Protoc Chem Biol       Date:  2015-06-01

9.  Engineering the substrate specificity of ADP-ribosyltransferases for identifying direct protein targets.

Authors:  Ian Carter-O'Connell; Haihong Jin; Rory K Morgan; Larry L David; Michael S Cohen
Journal:  J Am Chem Soc       Date:  2014-03-26       Impact factor: 15.419

10.  A systematic analysis of the PARP protein family identifies new functions critical for cell physiology.

Authors:  Sejal Vyas; Melissa Chesarone-Cataldo; Tanya Todorova; Yun-Han Huang; Paul Chang
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

View more
  4 in total

Review 1.  Research Progress on Mono-ADP-Ribosyltransferases in Human Cell Biology.

Authors:  Yujie Gan; Huanhuan Sha; Renrui Zou; Miao Xu; Yuan Zhang; Jifeng Feng; Jianzhong Wu
Journal:  Front Cell Dev Biol       Date:  2022-05-16

Review 2.  MARTs and MARylation in the Cytosol: Biological Functions, Mechanisms of Action, and Therapeutic Potential.

Authors:  Sridevi Challa; MiKayla S Stokes; W Lee Kraus
Journal:  Cells       Date:  2021-02-03       Impact factor: 6.600

Review 3.  Uncovering the Invisible: Mono-ADP-ribosylation Moved into the Spotlight.

Authors:  Ann-Katrin Hopp; Michael O Hottiger
Journal:  Cells       Date:  2021-03-19       Impact factor: 6.600

4.  ADP-ribosylation of RNA and DNA: from in vitro characterization to in vivo function.

Authors:  Lisa Weixler; Katja Schäringer; Jeffrey Momoh; Bernhard Lüscher; Karla L H Feijs; Roko Žaja
Journal:  Nucleic Acids Res       Date:  2021-04-19       Impact factor: 16.971

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.