Literature DB >> 28692967

Phase Vector Incompressible Registration Algorithm for Motion Estimation From Tagged Magnetic Resonance Images.

Fangxu Xing, Jonghye Woo, Arnold D Gomez, Dzung L Pham, Philip V Bayly, Maureen Stone, Jerry L Prince.   

Abstract

Tagged magnetic resonance imaging has been used for decades to observe and quantify motion and strain of deforming tissue. It is challenging to obtain 3-D motion estimates due to a tradeoff between image slice density and acquisition time. Typically, interpolation methods are used either to combine 2-D motion extracted from sparse slice acquisitions into 3-D motion or to construct a dense volume from sparse acquisitions before image registration methods are applied. This paper proposes a new phase-based 3-D motion estimation technique that first computes harmonic phase volumes from interpolated tagged slices and then matches them using an image registration framework. The approach uses several concepts from diffeomorphic image registration with a key novelty that defines a symmetric similarity metric on harmonic phase volumes from multiple orientations. The material property of harmonic phase solves the aperture problem of optical flow and intensity-based methods and is robust to tag fading. A harmonic magnitude volume is used in enforcing incompressibility in the tissue regions. The estimated motion fields are dense, incompressible, diffeomorphic, and inverse-consistent at a 3-D voxel level. The method was evaluated using simulated phantoms, human brain data in mild head accelerations, human tongue data during speech, and an open cardiac data set. The method shows comparable accuracy to three existing methods while demonstrating low computation time and robustness to tag fading and noise.

Entities:  

Mesh:

Year:  2017        PMID: 28692967      PMCID: PMC5628138          DOI: 10.1109/TMI.2017.2723021

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  67 in total

1.  Cardiac motion tracking using CINE harmonic phase (HARP) magnetic resonance imaging.

Authors:  N F Osman; W S Kerwin; E R McVeigh; J L Prince
Journal:  Magn Reson Med       Date:  1999-12       Impact factor: 4.668

2.  Three-dimensional motion reconstruction and analysis of the right ventricle using tagged MRI.

Authors:  I Haber; D N Metaxas; L Axel
Journal:  Med Image Anal       Date:  2000-12       Impact factor: 8.545

3.  Survey: interpolation methods in medical image processing.

Authors:  T M Lehmann; C Gönner; K Spitzer
Journal:  IEEE Trans Med Imaging       Date:  1999-11       Impact factor: 10.048

4.  Spatio-temporal tracking of myocardial deformations with a 4-D B-spline model from tagged MRI.

Authors:  J Huang; D Abendschein; V G Dávila-Román; A A Amini
Journal:  IEEE Trans Med Imaging       Date:  1999-10       Impact factor: 10.048

5.  Cardiac material markers from tagged MR images.

Authors:  W S Kerwin; J L Prince
Journal:  Med Image Anal       Date:  1998-12       Impact factor: 8.545

6.  Imaging heart motion using harmonic phase MRI.

Authors:  N F Osman; E R McVeigh; J L Prince
Journal:  IEEE Trans Med Imaging       Date:  2000-03       Impact factor: 10.048

7.  Visualizing myocardial function using HARP MRI.

Authors:  N F Osman; J L Prince
Journal:  Phys Med Biol       Date:  2000-06       Impact factor: 3.609

8.  Four-dimensional B-spline based motion analysis of tagged MR images: introduction and in vivo validation.

Authors:  C Ozturk; E R McVeigh
Journal:  Phys Med Biol       Date:  2000-06       Impact factor: 3.609

Review 9.  Current methods in medical image segmentation.

Authors:  D L Pham; C Xu; J L Prince
Journal:  Annu Rev Biomed Eng       Date:  2000       Impact factor: 9.590

10.  Phase contrast MRI of myocardial 3D strain by encoding contiguous slices in a single shot.

Authors:  Timothy G Reese; David A Feinberg; Jiangang Dou; Van J Wedeen
Journal:  Magn Reson Med       Date:  2002-04       Impact factor: 4.668

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  13 in total

1.  Atlas-Based Tongue Muscle Correlation Analysis From Tagged and High-Resolution Magnetic Resonance Imaging.

Authors:  Fangxu Xing; Maureen Stone; Tessa Goldsmith; Jerry L Prince; Georges El Fakhri; Jonghye Woo
Journal:  J Speech Lang Hear Res       Date:  2019-07-02       Impact factor: 2.297

2.  Strain Map of the Tongue in Normal and ALS Speech Patterns from Tagged and Diffusion MRI.

Authors:  Fangxu Xing; Jerry L Prince; Maureen Stone; Timothy G Reese; Nazem Atassi; Van J Wedeen; Georges El Fakhri; Jonghye Woo
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2018-03-02

3.  Differentiating post-cancer from healthy tongue muscle coordination patterns during speech using deep learning.

Authors:  Jonghye Woo; Fangxu Xing; Jerry L Prince; Maureen Stone; Jordan R Green; Tessa Goldsmith; Timothy G Reese; Van J Wedeen; Georges El Fakhri
Journal:  J Acoust Soc Am       Date:  2019-05       Impact factor: 1.840

4.  In vivo estimates of axonal stretch and 3D brain deformation during mild head impact.

Authors:  Andrew K Knutsen; Arnold D Gomez; Mihika Gangolli; Wen-Tung Wang; Deva Chan; Yuan-Chiao Lu; Eftychios Christoforou; Jerry L Prince; Philip V Bayly; John A Butman; Dzung L Pham
Journal:  Brain Multiphys       Date:  2020-09-03

5.  A Sparse Non-Negative Matrix Factorization Framework for Identifying Functional Units of Tongue Behavior From MRI.

Authors:  Jerry L Prince; Maureen Stone; Arnold D Gomez; Jordan R Green; Christopher J Hartnick; Thomas J Brady; Timothy G Reese; Van J Wedeen; Georges El Fakhri
Journal:  IEEE Trans Med Imaging       Date:  2018-09-18       Impact factor: 10.048

6.  A Novel Filtering Approach for 3D Harmonic Phase Analysis of Tagged MRI.

Authors:  Xiaokai Wang; Maureen L Stone; Jerry L Prince; Arnold D Gomez
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2018-03-02

7.  Statistical Characterization of Human Brain Deformation During Mild Angular Acceleration Measured In Vivo by Tagged Magnetic Resonance Imaging.

Authors:  Deva D Chan; Andrew K Knutsen; Yuan-Chiao Lu; Sarah H Yang; Elizabeth Magrath; Wen-Tung Wang; Philip V Bayly; John A Butman; Dzung L Pham
Journal:  J Biomech Eng       Date:  2018-10-01       Impact factor: 2.097

8.  Intermittently tagged real-time MRI reveals internal tongue motion during speech production.

Authors:  Weiyi Chen; Dani Byrd; Shrikanth Narayanan; Krishna S Nayak
Journal:  Magn Reson Med       Date:  2019-03-28       Impact factor: 4.668

9.  3-D Measurements of Acceleration-Induced Brain Deformation via Harmonic Phase Analysis and Finite-Element Models.

Authors:  Arnold D Gomez; Andrew K Knutsen; Fangxu Xing; Yuan-Chiao Lu; Deva Chan; Dzung L Pham; Philip Bayly; Jerry L Prince
Journal:  IEEE Trans Biomed Eng       Date:  2018-10-08       Impact factor: 4.538

10.  Analysis of fiber strain in the human tongue during speech.

Authors:  Arnold D Gomez; Maureen L Stone; Jonghye Woo; Fangxu Xing; Jerry L Prince
Journal:  Comput Methods Biomech Biomed Engin       Date:  2020-02-07       Impact factor: 1.763

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