Literature DB >> 28692038

PAR-TERRA directs homologous sex chromosome pairing.

Hsueh-Ping Chu1,2,3, John E Froberg1,2,3, Barry Kesner1,2,3, Hyun Jung Oh1,2,3, Fei Ji2,4, Ruslan Sadreyev2,4, Stefan F Pinter1,2,3, Jeannie T Lee1,2,3.   

Abstract

In mammals, homologous chromosomes rarely pair outside meiosis. One exception is the X chromosome, which transiently pairs during X-chromosome inactivation (XCI). How two chromosomes find each other in 3D space is not known. Here, we reveal a required interaction between the X-inactivation center (Xic) and the telomere in mouse embryonic stem (ES) cells. The subtelomeric, pseudoautosomal regions (PARs) of the two sex chromosomes (X and Y) also undergo pairing in both female and male cells. PARs transcribe a class of telomeric RNA, dubbed PAR-TERRA, which accounts for a vast majority of all TERRA transcripts. PAR-TERRA binds throughout the genome, including to the PAR and Xic. During X-chromosome pairing, PAR-TERRA anchors the Xic to the PAR, creating a 'tetrad' of pairwise homologous interactions (Xic-Xic, PAR-PAR, and Xic-PAR). Xic pairing occurs within the tetrad. Depleting PAR-TERRA abrogates pairing and blocks initiation of XCI, whereas autosomal PAR-TERRA induces ectopic pairing. We propose a 'constrained diffusion model' in which PAR-TERRA creates an interaction hub to guide Xic homology searching during XCI.

Entities:  

Mesh:

Substances:

Year:  2017        PMID: 28692038      PMCID: PMC5553554          DOI: 10.1038/nsmb.3432

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  51 in total

1.  Jpx RNA activates Xist by evicting CTCF.

Authors:  Sha Sun; Brian C Del Rosario; Attila Szanto; Yuya Ogawa; Yesu Jeon; Jeannie T Lee
Journal:  Cell       Date:  2013-06-20       Impact factor: 41.582

2.  CEAS: cis-regulatory element annotation system.

Authors:  Hyunjin Shin; Tao Liu; Arjun K Manrai; X Shirley Liu
Journal:  Bioinformatics       Date:  2009-08-18       Impact factor: 6.937

3.  X-inactivation profile reveals extensive variability in X-linked gene expression in females.

Authors:  Laura Carrel; Huntington F Willard
Journal:  Nature       Date:  2005-03-17       Impact factor: 49.962

4.  Tsix, a gene antisense to Xist at the X-inactivation centre.

Authors:  J T Lee; L S Davidow; D Warshawsky
Journal:  Nat Genet       Date:  1999-04       Impact factor: 38.330

5.  It takes two: communication between homologous alleles preserves genomic stability during V(D)J recombination.

Authors:  Vicky L Brandt; Susannah L Hewitt; Jane A Skok
Journal:  Nucleus       Date:  2010 Jan-Feb       Impact factor: 4.197

6.  Telomeric repeat-containing RNA and telomerase in human fetal oocytes.

Authors:  Rita Reig-Viader; Miguel Angel Brieño-Enríquez; Lela Khoriauli; Núria Toran; Lluís Cabero; Elena Giulotto; Montserrat Garcia-Caldés; Aurora Ruiz-Herrera
Journal:  Hum Reprod       Date:  2012-10-09       Impact factor: 6.918

Review 7.  Cis- and trans-regulation in X inactivation.

Authors:  Joke G van Bemmel; Hegias Mira-Bontenbal; Joost Gribnau
Journal:  Chromosoma       Date:  2015-07-22       Impact factor: 4.316

8.  Chromosomes. A comprehensive Xist interactome reveals cohesin repulsion and an RNA-directed chromosome conformation.

Authors:  Anand Minajigi; John Froberg; Chunyao Wei; Hongjae Sunwoo; Barry Kesner; David Colognori; Derek Lessing; Bernhard Payer; Myriam Boukhali; Wilhelm Haas; Jeannie T Lee
Journal:  Science       Date:  2015-06-18       Impact factor: 47.728

9.  Design and analysis of ChIP-seq experiments for DNA-binding proteins.

Authors:  Peter V Kharchenko; Michael Y Tolstorukov; Peter J Park
Journal:  Nat Biotechnol       Date:  2008-11-16       Impact factor: 54.908

10.  Comparison of Hi-C results using in-solution versus in-nucleus ligation.

Authors:  Takashi Nagano; Csilla Várnai; Stefan Schoenfelder; Biola-Maria Javierre; Steven W Wingett; Peter Fraser
Journal:  Genome Biol       Date:  2015-08-26       Impact factor: 13.583

View more
  17 in total

1.  A tetrad of chromatin interactions for chromosome pairing in X inactivation.

Authors:  Ivan Krivega; Ann Dean
Journal:  Nat Struct Mol Biol       Date:  2017-08-03       Impact factor: 15.369

2.  DNA-RNA interactions are critical for chromosome condensation in Escherichia coli.

Authors:  Zhong Qian; Victor B Zhurkin; Sankar Adhya
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-30       Impact factor: 11.205

3.  Characterization of telomeric repeat-containing RNA (TERRA) localization and protein interactions in primordial germ cells of the mouse†.

Authors:  Miguel A Brieño-Enríquez; Steffanie L Moak; Anyul Abud-Flores; Paula E Cohen
Journal:  Biol Reprod       Date:  2019-04-01       Impact factor: 4.285

Review 4.  Telomere and Subtelomere R-loops and Antigenic Variation in Trypanosomes.

Authors:  Arpita Saha; Vishal P Nanavaty; Bibo Li
Journal:  J Mol Biol       Date:  2019-11-02       Impact factor: 5.469

Review 5.  Gene regulation in time and space during X-chromosome inactivation.

Authors:  Agnese Loda; Samuel Collombet; Edith Heard
Journal:  Nat Rev Mol Cell Biol       Date:  2022-01-10       Impact factor: 113.915

6.  Paircounting.

Authors:  Huy Q Nguyen; S Dean Lee; C-Ting Wu
Journal:  Trends Genet       Date:  2019-09-12       Impact factor: 11.639

Review 7.  Subtelomeric Transcription and its Regulation.

Authors:  Marta Kwapisz; Antonin Morillon
Journal:  J Mol Biol       Date:  2020-02-06       Impact factor: 5.469

8.  Megadomains and superloops form dynamically but are dispensable for X-chromosome inactivation and gene escape.

Authors:  John E Froberg; Stefan F Pinter; Andrea J Kriz; Teddy Jégu; Jeannie T Lee
Journal:  Nat Commun       Date:  2018-11-27       Impact factor: 14.919

9.  Decapping enzyme 1A breaks X-chromosome symmetry by controlling Tsix elongation and RNA turnover.

Authors:  Hun-Goo Lee; Yong-Woo Lee; Eric Aeby; Andrea Kriz; Brian C Del Rosario; Hyun Jung Oh; Myriam Boukhali; Wilhelm Haas; Jeannie T Lee
Journal:  Nat Cell Biol       Date:  2020-08-17       Impact factor: 28.824

10.  Revisiting the consequences of deleting the X inactivation center.

Authors:  Hao Yin; Chunyao Wei; Jeannie T Lee
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-22       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.