| Literature DB >> 28690816 |
Wladimir Moya1, Gabriel Jacome1, ChangKyoo Yoo1.
Abstract
In order to enhance in terms of accuracy and predict the modeling of the potential distribution of species, the integration of using principal components of environmental variables as input of maximum entropy (MaxEnt) has been proposed in this study. Principal components selected previously from the principal component analysis results performed in ArcGIS in the environmental variables was used as an input data of MaxEnt instead of raw data to model the potential distribution of red spiny lobster from the year 1997 to 2015 and for three different future scenarios 2020, 2050, and 2070. One set of six original environmental variables pertaining to the years 1997-2015 and one set of four variables for future scenarios were transformed independently into a single multiband raster in ArcGIS in order to select the variables whose eigenvalues explains more than 5% of the total variance with the purpose to use in the modeling prediction in MaxEnt. The years 1997 and 1998 were chosen to compare the accuracy of the model, showing better results using principal components instead of raw data in terms of area under the curve and partial receiver operating characteristic as well as better predictions of suitable areas. Using principal components as input of MaxEnt enhances the prediction of good habitat suitability for red spiny lobster; however, future scenarios suggest an adequate management by researches to elaborate appropriate guidelines for the conservation of the habitat for this valuable specie with face to the climate change.Entities:
Keywords: ArcGIS; Eco‐informatics; Galapagos Islands; MaxEnt; modeling; potential distribution; principal components analysis, predictor variable
Year: 2017 PMID: 28690816 PMCID: PMC5496532 DOI: 10.1002/ece3.3054
Source DB: PubMed Journal: Ecol Evol ISSN: 2045-7758 Impact factor: 2.912
Figure 1Study area for RSP in the Galapagos Islands—Ecuador
Original environmental variables used in the study
| (a) Environmental variables in the 19‐year period (1997–2015) |
| AMAT = Annual maximum air temperature |
| AMeAT = Annual mean air temperature |
| AMiAT = Annual minimum air temperature |
| ARH = Annual relative humidity |
| ASST = Annual sea surface temperature |
| AP = Annual precipitation |
| (b) Environmental variables for future scenarios (2020, 2050 and 2070) |
| PPT = Total precipitation |
| TS = Surface temperature |
| TASMAX = Maximum air temperature |
| TASMIN = Minimum air temperature |
Figure 2Generation of species distribution models using principal components as input of MaxEnt
Number of principal components (PCs) extracted from principal components analysis during the 19‐year period and for future scenarios (2020, 2050, and 2070) based on percent explained by eigenvalues (>5%)
| Year | Number of PCs | % of variance explained |
|---|---|---|
| 1997 | 2 | 96.71 |
| 1998 | 2 | 95.26 |
| 1999 | 3 | 94.40 |
| 2000 | 4 | 98.03 |
| 2001 | 3 | 96.45 |
| 2002 | 2 | 98.34 |
| 2003 | 2 | 96.41 |
| 2004 | 2 | 92.71 |
| 2005 | 3 | 96.75 |
| 2006 | 4 | 95.77 |
| 2007 | 3 | 97.68 |
| 2008 | 2 | 97.13 |
| 2009 | 3 | 94.79 |
| 2010 | 3 | 98.10 |
| 2011 | 3 | 98.30 |
| 2012 | 3 | 96.66 |
| 2013 | 4 | 98.68 |
| 2014 | 3 | 95.84 |
| 2015 | 3 | 95.10 |
| 2020 | 4 | 99.97 |
| 2050 | 4 | 99.99 |
| 2070 | 4 | 99.94 |
Figure 3Distribution maps for red spiny lobster (RSL) in Galapagos marine reserve for the 19‐year period (a) 1997, (b) 1998, (c) 1999, (d) 2000, (e) 2001, (f) 2002, (g) 2003, (h) 2004, (i) 2005, (j) 2006, (k) 2007, (l) 2008, (m) 2009, (n) 2010, (o) 2011, (p) 2012, (q) 2013, (r) 2014, (s) 2015. Green dots represent the presence of the RSL, warmer colors indicate high probability of suitable conditions, and blue color indicates low predicted probability of suitable conditions
Figure 4Distribution maps for red spiny lobster (RSL) in Galapagos marine reserve for the years 1997 using (a) principal components as input of MaxEnt and (b) raw data. Green dots represent the presence of the RSL, warmer colors indicate high probability of suitable conditions, and blue color indicate low predicted probability of suitable conditions
Contribution of the variables during the 19‐year period and future scenarios in the modelling of the red spiny lobster distribution
| Year | Variable contribution |
|---|---|
| 1997 | ARH (53.8%), AMAT (23%) |
| 1998 | AMAT (37%), ASST (33.5%) |
| 1999 | AMiAT (32.5%), AMAT (24.9%), ASST (22.8%) |
| 2000 | AMAT (30.4%), AMeAT (28.7%), ASST (26.7%), AMiAT (14.2%) |
| 2001 | ASST (34.6%), AMeAT (29.3%), AMiAT (18.2%) |
| 2002 | ARH (39.6%), AP (34.3%) |
| 2003 | AP (54.3%), ASST (14.6%) |
| 2004 | AP (35.6%), ARH (25.2%) |
| 2005 | AMeAT (34.2%), AP (27.8%), ARH (22.9%) |
| 2006 | ASST (48%), AP (32%), ARH (19.9%), AMAT (12.3%) |
| 2007 | AMeAT (32.8%), ASST (23.4%), ARH (22.3%) |
| 2008 | ARH (37.3%), AP (20.2%) |
| 2009 | AP (40.3%), AMeAT (25.2%), ASST (18.6%) |
| 2010 | AP (42.3%), AMeAT (28.9%), ARH (19.9%) |
| 2011 | AP (41.5%), ASST (31.5%), AMeAT (14.5%) |
| 2012 | ASST (53.8%), AP (17.8%), AMeAT (15.1%) |
| 2013 | ARH (41.9%), AP (41.8%), AMeAT (9.3%), ASST (7%) |
| 2014 | ASST (45.7%), AMeAT (40.8%), ARH (13.5%) |
| 2015 | ASST (39%), ARH (32.9%), AMeAT (28.1%) |
| 2020 | ASST (44.3%), AMiAT (25.8%), AMAT (16.3%), AP (13.6%) |
| 2050 | AMAT (34%), ASST (30.5%), AMiAT (28.5%), AP (7%) |
| 2070 | AMAT (38%), AMiAT (30.7%), ASST (21.5%), AP (9.7%) |
See Nomenclature section for explanations.
Area under the curve (AUC) and Kappa values for red spiny lobster generated by MaxEnt and ArcGIS
| Year | PCs | Raw data | ||
|---|---|---|---|---|
| AUC | Kappa | AUC | Kappa | |
| 1997 | 0.92 | 0.98 | 0.81 | 0.85 |
| 1998 | 0.94 | 0.96 | 0.84 | 0.87 |
| 1999 | 0.93 | 0.95 | ||
| 2000 | 0.94 | 0.94 | ||
| 2001 | 0.93 | 0.97 | ||
| 2002 | 0.94 | 0.92 | ||
| 2003 | 0.95 | 0.95 | ||
| 2004 | 0.95 | 0.98 | ||
| 2005 | 0.93 | 0.94 | ||
| 2006 | 0.93 | 0.98 | ||
| 2007 | 0.94 | 0.95 | ||
| 2008 | 0.92 | 0.98 | ||
| 2009 | 0.85 | 0.99 | ||
| 2010 | 0.90 | 0.99 | ||
| 2011 | 0.89 | 0.98 | ||
| 2012 | 0.86 | 0.97 | ||
| 2013 | 0.81 | 0.95 | ||
| 2014 | 0.87 | 0.93 | ||
| 2015 | 0.85 | 0.74 | ||
| 2020 | 0.98 | 0.98 | ||
| 2050 | 0.98 | 0.99 | ||
| 2070 | 0.97 | 0.98 | ||
Figure 5Distribution maps for red spiny lobster around Galapagos marine reserve for future scenarios pertaining to the years (a) 2020, (b) 2050, and (c) 2070. Warmer colors indicate high probability of suitable conditions and blue color indicates low predicted probability of suitable conditions
| AUC | Area under the curve |
| AMAT | Annual maximum air temperature |
| AMeAT | Annual mean air temperature |
| AMiAT | Annual minimum air temperature |
| ARH | Annual relative humidity |
| AP | Annual precipitation |
| ASST | Annual sea surface temperature |
| FA | Factor analysis |
| GMR | Galapagos marine reserve |
| HMAP | History of Marine Animal Populations |
| IPCC | Climate Change Commitment Scenario |
| ITCZ | Intertropical convergence zone |
| LRM | Logistic regression model |
| PCA | Principal component analysis |
| PC | Principal component |
| PPT | Total precipitation |
| RSL | Red spiny lobster |
| ROC | Receiver operating characteristic |
| SDM | Species distribution modeling |
| TASMAX | Maximum air temperature |
| TASMIN | Minimum air temperature |
| TS | Surface temperature |