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Literature DB >> 28686875

Subtractional Heterogeneity: A Crucial Step toward Defining Specialized Ribosomes.

Abstract

In this issue of Molecular Cell, Shi et al. (2017) identify translating ribosomes which lack specific proteins and associate with specific classes of mRNAs. This challenges the popular conception of "the ribosome" as a homogeneous, monolithic molecular machine.

Entities: Chemical Disease Gene Species

Mesh：

Substances：
RNA, Messenger

Year: 2017 PMID： 28686875 PMCID： PMC5828171 DOI： 10.1016/j.molcel.2017.06.022

Source DB: PubMed Journal: Mol Cell ISSN： 1097-2765 Impact factor: 17.970

10 in total

Review 1. Pathways to Specialized Ribosomes: The Brussels Lecture.

Authors: Jonathan D Dinman
Journal: J Mol Biol Date: 2016-01-04 Impact factor: 5.469

Review 2. Specialized ribosomes: a new frontier in gene regulation and organismal biology.

Authors: Shifeng Xue; Maria Barna
Journal: Nat Rev Mol Cell Biol Date: 2012-05-23 Impact factor: 94.444

Review 3. Threading the needle: getting selenocysteine into proteins.

Authors: Jesse Donovan; Paul R Copeland
Journal: Antioxid Redox Signal Date: 2010-04-01 Impact factor: 8.401

4. Heterogeneous Ribosomes Preferentially Translate Distinct Subpools of mRNAs Genome-wide.

Authors: Zhen Shi; Kotaro Fujii; Kyle M Kovary; Naomi R Genuth; Hannes L Röst; Mary N Teruel; Maria Barna
Journal: Mol Cell Date: 2017-06-15 Impact factor: 17.970

5. Structural and functional analysis of 5S rRNA in Saccharomyces cerevisiae.

Authors: Sergey Kiparisov; Alexey Petrov; Arturas Meskauskas; Petr V Sergiev; Olga A Dontsova; Jonathan D Dinman
Journal: Mol Genet Genomics Date: 2005-10-20 Impact factor: 3.291

6. Ribosome-mediated specificity in Hox mRNA translation and vertebrate tissue patterning.

Authors: Aya Pusic; Craig R Stumpf; Nadya Kondrashov; Kunihiko Shimizu; Andrew C Hsieh; Junko Ishijima; Toshihiko Shiroishi; Maria Barna
Journal: Cell Date: 2011-04-29 Impact factor: 41.582

Review 7. Probing the mechanisms underlying human diseases in making ribosomes.

Authors: Katherine I Farley; Susan J Baserga
Journal: Biochem Soc Trans Date: 2016-08-15 Impact factor: 5.407

8. Nucleotide sequence of Xenopus borealis oocyte 5S DNA: comparison of sequences that flank several related eucaryotic genes.

Authors: L J Korn; D D Brown
Journal: Cell Date: 1978-12 Impact factor: 41.582

9. Expression of distinct maternal and somatic 5.8S, 18S, and 28S rRNA types during zebrafish development.

Authors: Mauro D Locati; Johanna F B Pagano; Geneviève Girard; Wim A Ensink; Marina van Olst; Selina van Leeuwen; Ulrike Nehrdich; Herman P Spaink; Han Rauwerda; Martijs J Jonker; Rob J Dekker; Timo M Breit
Journal: RNA Date: 2017-05-12 Impact factor: 4.942

10. Quantitative analysis of rRNA modifications using stable isotope labeling and mass spectrometry.

Authors: Anna M Popova; James R Williamson
Journal: J Am Chem Soc Date: 2014-01-27 Impact factor: 15.419

10 in total

16 in total

Review 1. uORF-mediated translational control: recently elucidated mechanisms and implications in cancer.

Authors: Hung-Hsi Chen; Woan-Yuh Tarn
Journal: RNA Biol Date: 2019-06-24 Impact factor: 4.652

2. Ribosomal Proteins Regulate MHC Class I Peptide Generation for Immunosurveillance.

Authors: Jiajie Wei; Rigel J Kishton; Matthew Angel; Crystal S Conn; Nicole Dalla-Venezia; Virginie Marcel; Anne Vincent; Frédéric Catez; Sabrina Ferré; Lilia Ayadi; Virginie Marchand; Devin Dersh; James S Gibbs; Ivaylo P Ivanov; Nathan Fridlyand; Yohann Couté; Jean-Jacques Diaz; Shu-Bing Qian; Louis M Staudt; Nicholas P Restifo; Jonathan W Yewdell
Journal: Mol Cell Date: 2019-01-31 Impact factor: 17.970

3. Proteome-transcriptome analysis and proteome remodeling in mouse lens epithelium and fibers.

Authors: Yilin Zhao; Phillip A Wilmarth; Catherine Cheng; Saima Limi; Velia M Fowler; Deyou Zheng; Larry L David; Ales Cvekl
Journal: Exp Eye Res Date: 2018-10-22 Impact factor: 3.467

Review 4. Crystallin gene expression: Insights from studies of transcriptional bursting.

Authors: Ales Cvekl; Carolina Eliscovich
Journal: Exp Eye Res Date: 2021-04-21 Impact factor: 3.770

5. Variant ribosomal RNA alleles are conserved and exhibit tissue-specific expression.

Authors: Matthew M Parks; Chad M Kurylo; Randall A Dass; Linda Bojmar; David Lyden; C Theresa Vincent; Scott C Blanchard
Journal: Sci Adv Date: 2018-02-28 Impact factor: 14.136

Review 6. The Emerging Field of Epitranscriptomics in Neurodevelopmental and Neuronal Disorders.

Authors: Margarita T Angelova; Dilyana G Dimitrova; Nadja Dinges; Tina Lence; Lina Worpenberg; Clément Carré; Jean-Yves Roignant
Journal: Front Bioeng Biotechnol Date: 2018-04-13

Review 7. How Ribosomes Translate Cancer.

Authors: Sergey O Sulima; Isabel J F Hofman; Kim De Keersmaecker; Jonathan D Dinman
Journal: Cancer Discov Date: 2017-09-18 Impact factor: 39.397

8. Spatially Enriched Paralog Rearrangements Argue Functionally Diverse Ribosomes Arise during Cold Acclimation in Arabidopsis.

Authors: Federico Martinez-Seidel; Olga Beine-Golovchuk; Yin-Chen Hsieh; Kheloud El Eshraky; Michal Gorka; Bo-Eng Cheong; Erika V Jimenez-Posada; Dirk Walther; Aleksandra Skirycz; Ute Roessner; Joachim Kopka; Alexandre Augusto Pereira Firmino
Journal: Int J Mol Sci Date: 2021-06-07 Impact factor: 5.923

9. Endogenous rRNA Sequence Variation Can Regulate Stress Response Gene Expression and Phenotype.

Authors: Chad M Kurylo; Matthew M Parks; Manuel F Juette; Boris Zinshteyn; Roger B Altman; Jordana K Thibado; C Theresa Vincent; Scott C Blanchard
Journal: Cell Rep Date: 2018-10-02 Impact factor: 9.423

Review 10. Translational regulation in response to stress in Saccharomyces cerevisiae.

Authors: Robert A Crawford; Graham D Pavitt
Journal: Yeast Date: 2018-09-03 Impact factor: 3.239