Literature DB >> 28686570

Using Metagenomics to Connect Microbial Community Biodiversity and Functions.

Lucas William Mendes1, Lucas Peres Palma Braga1, Acacio Aparecido Navarrete1, Dennis Goss de Souza1, Genivaldo Gueiros Zacarias Silva2, Siu Mui Tsai1.   

Abstract

Microbes constitute about a third of the Earth's biomass and are composed by an enormous genetic diversity. In a majority of environments the microbial communities play crucial roles for the ecosystem functioning, where a drastic biodiversity alteration or loss could lead to negative effects on the environment and sustainability. A central goal in microbiome studies is to elucidate the relation between microbial diversity to functions. A better understanding of the relation diversity-function would increase the ability to manipulate that diversity to improve plant and animal health and also setting conservation priorities. The recent advances in genomic methodologies in microbial ecology have provide means to assess highly complex communities in detail, making possible the link between diversity and the functions performed by the microbes. In this work we first explore some advances in bioinformatics tools to connect the microbial community biodiversity to their potential metabolism and after present some examples of how this information can be useful for a better understanding of the microbial role in the environment.

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Year:  2017        PMID: 28686570     DOI: 10.21775/cimb.024.103

Source DB:  PubMed          Journal:  Curr Issues Mol Biol        ISSN: 1467-3037            Impact factor:   2.081


  7 in total

1.  MetaWRAP-a flexible pipeline for genome-resolved metagenomic data analysis.

Authors:  Gherman V Uritskiy; Jocelyne DiRuggiero; James Taylor
Journal:  Microbiome       Date:  2018-09-15       Impact factor: 14.650

2.  Dynamics of archaeal community in soil with application of composted tannery sludge.

Authors:  Ana Roberta Lima Miranda; Lucas William Mendes; Leandro Nascimento Lemos; Jadson Emanuel Lopes Antunes; Marineide Rodrigues Amorim; Vania Maria Maciel Melo; Wanderley Jose de Melo; Paul J Van den Brink; Ademir Sergio Ferreira Araujo
Journal:  Sci Rep       Date:  2019-05-14       Impact factor: 4.379

3.  Distinct bacterial community structure and composition along different cowpea producing ecoregions in Northeastern Brazil.

Authors:  Luciana de Sousa Lopes; Lucas William Mendes; Jadson Emanuel Lopes Antunes; Louise Melo de Souza Oliveira; Vania Maria Maciel Melo; Arthur Prudêncio de Araujo Pereira; Antonio Félix da Costa; José de Paula Oliveira; Cosme Rafael Martínez; Marcia do Vale Barreto Figueiredo; Ademir Sérgio Ferreira Araujo
Journal:  Sci Rep       Date:  2021-01-12       Impact factor: 4.379

Review 4.  Antibiotic Resistance: One Health One World Outlook.

Authors:  Bilal Aslam; Mohsin Khurshid; Muhammad Imran Arshad; Saima Muzammil; Maria Rasool; Nafeesa Yasmeen; Taif Shah; Tamoor Hamid Chaudhry; Muhammad Hidayat Rasool; Aqsa Shahid; Xia Xueshan; Zulqarnain Baloch
Journal:  Front Cell Infect Microbiol       Date:  2021-11-25       Impact factor: 5.293

5.  Functional Diversity of Microbial Communities in the Soybean (Glycine max L.) Rhizosphere from Free State, South Africa.

Authors:  Titilope Tinu Ajiboye; Ayansina Segun Ayangbenro; Olubukola Oluranti Babalola
Journal:  Int J Mol Sci       Date:  2022-08-20       Impact factor: 6.208

6.  Dynamics of Bacterial Community Structure in the Rhizosphere and Root Nodule of Soybean: Impacts of Growth Stages and Varieties.

Authors:  Soo-In Sohn; Jae-Hyung Ahn; Subramani Pandian; Young-Ju Oh; Eun-Kyoung Shin; Hyeon-Jung Kang; Woo-Suk Cho; Youn-Sung Cho; Kong-Sik Shin
Journal:  Int J Mol Sci       Date:  2021-05-25       Impact factor: 5.923

7.  Metagenomic Analysis Reveals Bacterial and Fungal Diversity and Their Bioremediation Potential From Sediments of River Ganga and Yamuna in India.

Authors:  Bijay Kumar Behera; Hirak Jyoti Chakraborty; Biswanath Patra; Ajaya Kumar Rout; Budheswar Dehury; Basanta Kumar Das; Dhruba Jyoti Sarkar; Pranaya Kumar Parida; Rohan Kumar Raman; Atmakuri Ramakrishna Rao; Anil Rai; Trilochan Mohapatra
Journal:  Front Microbiol       Date:  2020-10-16       Impact factor: 5.640

  7 in total

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