Literature DB >> 28686230

Chromatin-enriched lncRNAs: a novel class of enhancer RNAs.

Srimonta Gayen1, Sundeep Kalantry1.   

Abstract

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Year:  2017        PMID： 28686230      PMCID： PMC6190603          DOI： 10.1038/nsmb.3430

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN： 1545-9985            Impact factor:   15.369


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  19 in total

1.  Large-scale transcriptional activity in chromosomes 21 and 22.

Authors:  Philipp Kapranov; Simon E Cawley; Jorg Drenkow; Stefan Bekiranov; Robert L Strausberg; Stephen P A Fodor; Thomas R Gingeras
Journal:  Science       Date:  2002-05-03       Impact factor: 47.728

2.  Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays.

Authors:  Philipp Kapranov; Jorg Drenkow; Jill Cheng; Jeffrey Long; Gregg Helt; Sujit Dike; Thomas R Gingeras
Journal:  Genome Res       Date:  2005-07       Impact factor: 9.043

3.  A meta-analysis of the genomic and transcriptomic composition of complex life.

Authors:  Ganqiang Liu; John S Mattick; Ryan J Taft
Journal:  Cell Cycle       Date:  2013-06-06       Impact factor: 4.534

4.  Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.

Authors:  Moran N Cabili; Cole Trapnell; Loyal Goff; Magdalena Koziol; Barbara Tazon-Vega; Aviv Regev; John L Rinn
Journal:  Genes Dev       Date:  2011-09-02       Impact factor: 11.361

Review 5.  "Cat's Cradling" the 3D Genome by the Act of LncRNA Transcription.

Authors:  Marta Melé; John L Rinn
Journal:  Mol Cell       Date:  2016-06-02       Impact factor: 17.970

Review 6.  The Dimensions, Dynamics, and Relevance of the Mammalian Noncoding Transcriptome.

Authors:  Ira W Deveson; Simon A Hardwick; Tim R Mercer; John S Mattick
Journal:  Trends Genet       Date:  2017-05-20       Impact factor: 11.639

7.  A Primary Role for the Tsix lncRNA in Maintaining Random X-Chromosome Inactivation.

Authors:  Srimonta Gayen; Emily Maclary; Emily Buttigieg; Michael Hinten; Sundeep Kalantry
Journal:  Cell Rep       Date:  2015-05-14       Impact factor: 9.423

8.  Sex-specific silencing of X-linked genes by Xist RNA.

Authors:  Srimonta Gayen; Emily Maclary; Michael Hinten; Sundeep Kalantry
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-06       Impact factor: 11.205

9.  An atlas of active enhancers across human cell types and tissues.

Authors:  Robin Andersson; Claudia Gebhard; Michael Rehli; Albin Sandelin; Irene Miguel-Escalada; Ilka Hoof; Jette Bornholdt; Mette Boyd; Yun Chen; Xiaobei Zhao; Christian Schmidl; Takahiro Suzuki; Evgenia Ntini; Erik Arner; Eivind Valen; Kang Li; Lucia Schwarzfischer; Dagmar Glatz; Johanna Raithel; Berit Lilje; Nicolas Rapin; Frederik Otzen Bagger; Mette Jørgensen; Peter Refsing Andersen; Nicolas Bertin; Owen Rackham; A Maxwell Burroughs; J Kenneth Baillie; Yuri Ishizu; Yuri Shimizu; Erina Furuhata; Shiori Maeda; Yutaka Negishi; Christopher J Mungall; Terrence F Meehan; Timo Lassmann; Masayoshi Itoh; Hideya Kawaji; Naoto Kondo; Jun Kawai; Andreas Lennartsson; Carsten O Daub; Peter Heutink; David A Hume; Torben Heick Jensen; Harukazu Suzuki; Yoshihide Hayashizaki; Ferenc Müller; Alistair R R Forrest; Piero Carninci
Journal:  Nature       Date:  2014-03-27       Impact factor: 49.962

10.  The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.

Authors:  Thomas Derrien; Rory Johnson; Giovanni Bussotti; Andrea Tanzer; Sarah Djebali; Hagen Tilgner; Gregory Guernec; David Martin; Angelika Merkel; David G Knowles; Julien Lagarde; Lavanya Veeravalli; Xiaoan Ruan; Yijun Ruan; Timo Lassmann; Piero Carninci; James B Brown; Leonard Lipovich; Jose M Gonzalez; Mark Thomas; Carrie A Davis; Ramin Shiekhattar; Thomas R Gingeras; Tim J Hubbard; Cedric Notredame; Jennifer Harrow; Roderic Guigó
Journal:  Genome Res       Date:  2012-09       Impact factor: 9.043
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  4 in total

Review 1.  Long non-coding regulatory RNAs in sponges and insights into the origin of animal multicellularity.

Authors:  Federico Gaiti; Bernard M Degnan; Miloš Tanurdžić
Journal:  RNA Biol       Date:  2018-05-25       Impact factor: 4.652

Review 2.  An Overview of Long Noncoding RNAs Involved in Bone Regeneration from Mesenchymal Stem Cells.

Authors:  Shuping Peng; Lihua Cao; Shiwei He; Yancheng Zhong; Haotian Ma; Yanru Zhang; Cijun Shuai
Journal:  Stem Cells Int       Date:  2018-01-28       Impact factor: 5.443

Review 3.  Insight Into Chromatin-Enriched RNA: A Key Chromatin Regulator in Tumors.

Authors:  Jixing Zhang; Tianyi Ding; He Zhang
Journal:  Front Cell Dev Biol       Date:  2021-04-14

4.  Chromatin-enriched RNAs mark active and repressive cis-regulation: An analysis of nuclear RNA-seq.

Authors:  Xiangying Sun; Zhezhen Wang; Johnathon M Hall; Carlos Perez-Cervantes; Alexander J Ruthenburg; Ivan P Moskowitz; Michael Gribskov; Xinan H Yang
Journal:  PLoS Comput Biol       Date:  2020-02-10       Impact factor: 4.779
  4 in total

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