Literature DB >> 28681414

Structure and catalytic activation of the TRIM23 RING E3 ubiquitin ligase.

Daria M Dawidziak1, Jacint G Sanchez1, Jonathan M Wagner1, Barbie K Ganser-Pornillos1, Owen Pornillos1.   

Abstract

Tripartite motif (TRIM) proteins comprise a large family of RING-type ubiquitin E3 ligases that regulate important biological processes. An emerging general model is that TRIMs form elongated antiparallel coiled-coil dimers that prevent interaction of the two attendant RING domains. The RING domains themselves bind E2 conjugating enzymes as dimers, implying that an active TRIM ligase requires higher-order oligomerization of the basal coiled-coil dimers. Here, we report crystal structures of the TRIM23 RING domain in isolation and in complex with an E2-ubiquitin conjugate. Our results indicate that TRIM23 enzymatic activity requires RING dimerization, consistent with the general model of TRIM activation.
© 2017 Wiley Periodicals, Inc.

Entities:  

Keywords:  E3 ligase; crystal structure; dimer; enzyme activation; tripartite motif; ubiquitination

Mesh:

Substances:

Year:  2017        PMID: 28681414      PMCID: PMC5638660          DOI: 10.1002/prot.25348

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  24 in total

1.  Polyubiquitin conjugation to NEMO by triparite motif protein 23 (TRIM23) is critical in antiviral defense.

Authors:  Kei-ichiro Arimoto; Kenji Funami; Yasushi Saeki; Keiji Tanaka; Katsuya Okawa; Osamu Takeuchi; Shizuo Akira; Yoshiki Murakami; Kunitada Shimotohno
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-19       Impact factor: 11.205

2.  TRIM5α-Mediated Ubiquitin Chain Conjugation Is Required for Inhibition of HIV-1 Reverse Transcription and Capsid Destabilization.

Authors:  Edward M Campbell; Jared Weingart; Paola Sette; Silvana Opp; Jaya Sastri; Sarah K O'Connor; Sarah Talley; Felipe Diaz-Griffero; Vanessa Hirsch; Fadila Bouamr
Journal:  J Virol       Date:  2015-12-16       Impact factor: 5.103

3.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

4.  The cytoplasmic body component TRIM5alpha restricts HIV-1 infection in Old World monkeys.

Authors:  Matthew Stremlau; Christopher M Owens; Michel J Perron; Michael Kiessling; Patrick Autissier; Joseph Sodroski
Journal:  Nature       Date:  2004-02-26       Impact factor: 49.962

Review 5.  TRIM/RBCC, a novel class of 'single protein RING finger' E3 ubiquitin ligases.

Authors:  Germana Meroni; Graciana Diez-Roux
Journal:  Bioessays       Date:  2005-11       Impact factor: 4.345

6.  Identification of a genomic reservoir for new TRIM genes in primate genomes.

Authors:  Kyudong Han; Dianne I Lou; Sara L Sawyer
Journal:  PLoS Genet       Date:  2011-12-01       Impact factor: 5.917

7.  TRIM5α requires Ube2W to anchor Lys63-linked ubiquitin chains and restrict reverse transcription.

Authors:  Adam J Fletcher; Devin E Christensen; Chad Nelson; Choon Ping Tan; Torsten Schaller; Paul J Lehner; Wesley I Sundquist; Greg J Towers
Journal:  EMBO J       Date:  2015-06-22       Impact factor: 11.598

8.  SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information.

Authors:  Marco Biasini; Stefan Bienert; Andrew Waterhouse; Konstantin Arnold; Gabriel Studer; Tobias Schmidt; Florian Kiefer; Tiziano Gallo Cassarino; Martino Bertoni; Lorenza Bordoli; Torsten Schwede
Journal:  Nucleic Acids Res       Date:  2014-04-29       Impact factor: 16.971

9.  Mechanism of B-box 2 domain-mediated higher-order assembly of the retroviral restriction factor TRIM5α.

Authors:  Jonathan M Wagner; Marcin D Roganowicz; Katarzyna Skorupka; Steven L Alam; Devin Christensen; Ginna Doss; Yueping Wan; Gabriel A Frank; Barbie K Ganser-Pornillos; Wesley I Sundquist; Owen Pornillos
Journal:  Elife       Date:  2016-06-02       Impact factor: 8.140

10.  Mechanism of TRIM25 Catalytic Activation in the Antiviral RIG-I Pathway.

Authors:  Jacint G Sanchez; Jessica J Chiang; Konstantin M J Sparrer; Steven L Alam; Michael Chi; Marcin D Roganowicz; Banumathi Sankaran; Michaela U Gack; Owen Pornillos
Journal:  Cell Rep       Date:  2016-07-14       Impact factor: 9.423

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  13 in total

Review 1.  Structural basis of generic versus specific E2-RING E3 interactions in protein ubiquitination.

Authors:  Mehmet Gundogdu; Helen Walden
Journal:  Protein Sci       Date:  2019-08-23       Impact factor: 6.725

2.  Molecular Characterization and Expression Analysis of ftr01, ftr42, and ftr58 in Zebrafish (Danio rerio).

Authors:  Wanmeng Liu; Ming Kuang; Ze Zhang; Yuanan Lu; Xueqin Liu
Journal:  Virol Sin       Date:  2019-04-15       Impact factor: 4.327

3.  A cullin-RING ubiquitin ligase promotes thermotolerance as part of the intracellular pathogen response in Caenorhabditis elegans.

Authors:  Johan Panek; Spencer S Gang; Kirthi C Reddy; Robert J Luallen; Amitkumar Fulzele; Eric J Bennett; Emily R Troemel
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-19       Impact factor: 11.205

Review 4.  Ubiquitination, Biotech Startups, and the Future of TRIM Family Proteins: A TRIM-Endous Opportunity.

Authors:  Utsa Bhaduri; Giuseppe Merla
Journal:  Cells       Date:  2021-04-25       Impact factor: 6.600

5.  RING tetramerization is required for nuclear body biogenesis and PML sumoylation.

Authors:  Pengran Wang; Shirine Benhenda; Haiyan Wu; Valérie Lallemand-Breitenbach; Tao Zhen; Florence Jollivet; Laurent Peres; Yuwen Li; Sai-Juan Chen; Zhu Chen; Hugues de Thé; Guoyu Meng
Journal:  Nat Commun       Date:  2018-03-29       Impact factor: 14.919

Review 6.  The TRIMendous Role of TRIMs in Virus-Host Interactions.

Authors:  Sarah van Tol; Adam Hage; Maria Isabel Giraldo; Preeti Bharaj; Ricardo Rajsbaum
Journal:  Vaccines (Basel)       Date:  2017-08-22

7.  Structural and functional characterization of hMEX-3C Ring finger domain as an E3 ubiquitin ligase.

Authors:  Sayed Ala Moududee; Yiyang Jiang; Nshogoza Gilbert; Guodong Xie; Zheng Xu; Jihui Wu; Qingguo Gong; Yajun Tang; Yunyu Shi
Journal:  Protein Sci       Date:  2018-09       Impact factor: 6.725

8.  Structural insights into non-covalent ubiquitin activation of the cIAP1-UbcH5B∼ubiquitin complex.

Authors:  Amrita Patel; Gary J Sibbet; Danny T Huang
Journal:  J Biol Chem       Date:  2018-12-06       Impact factor: 5.157

9.  Characterisation of class VI TRIM RING domains: linking RING activity to C-terminal domain identity.

Authors:  Rebecca V Stevens; Diego Esposito; Katrin Rittinger
Journal:  Life Sci Alliance       Date:  2019-04-26

10.  Analysis of the Zn-Binding Domains of TRIM32, the E3 Ubiquitin Ligase Mutated in Limb Girdle Muscular Dystrophy 2H.

Authors:  Elisa Lazzari; Medhat S El-Halawany; Matteo De March; Floriana Valentino; Francesco Cantatore; Chiara Migliore; Silvia Onesti; Germana Meroni
Journal:  Cells       Date:  2019-03-16       Impact factor: 6.600

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