Literature DB >> 28681112

Characterization of a cold-active bacterium isolated from the South Pole "Ice Tunnel".

Michael T Madigan1, Megan L Kempher2,3, Kelly S Bender2, Paul Sullivan4, W Matthew Sattley5, Alice C Dohnalkova6, Samantha B Joye7.   

Abstract

Extremely cold microbial habitats on Earth (those below -30 °C) are rare and have not been surveyed for microbes as extensively as environments in the 0 to -20 °C range. Using cryoprotected growth media incubated at -5 °C, we enriched a cold-active Pseudomonas species from -50 °C ice collected from a utility tunnel for wastewater pipes under Amundsen-Scott South Pole Station, Antarctica. The isolate, strain UC-1, is related to other cold-active Pseudomonas species, most notably P. psychrophila, and grew at -5 °C to +34-37 °C; growth of UC-1 at +3 °C was significantly faster than at +34 °C. Strain UC-1 synthesized a surface exopolymer and high levels of unsaturated fatty acids under cold growth conditions. A 16S rRNA gene diversity screen of the ice sample that yielded strain UC-1 revealed over 1200 operational taxonomic units (OTUs) distributed across eight major classes of Bacteria. Many of the OTUs were Clostridia and Bacteriodia and some of these were probably of wastewater origin. However, a significant fraction of the OTUs were Proteobacteria and Actinobacteria of likely environmental origin. Our results shed light on the lower temperature limits to life and the possible existence of functional microbial communities in ultra-cold environments.

Entities:  

Keywords:  Amundsen–Scott South Pole Station; Antarctic microbiology; Pseudomonas psychrophila

Mesh:

Substances:

Year:  2017        PMID: 28681112     DOI: 10.1007/s00792-017-0950-2

Source DB:  PubMed          Journal:  Extremophiles        ISSN: 1431-0651            Impact factor:   2.395


  67 in total

1.  Isolation of bacteria and 16S rDNAs from Lake Vostok accretion ice.

Authors:  B C Christner; E Mosley-Thompson; L G Thompson; J N Reeve
Journal:  Environ Microbiol       Date:  2001-09       Impact factor: 5.491

2.  A gas vesiculate planktonic strain of the purple non-sulfur bacterium Rhodoferax antarcticus isolated from Lake Fryxell, Dry Valleys, Antarctica.

Authors:  Deborah O Jung; Laurie A Achenbach; Elizabeth A Karr; Shinichi Takaichi; Michael T Madigan
Journal:  Arch Microbiol       Date:  2004-08-31       Impact factor: 2.552

Review 3.  Subglacial Lake Whillans microbial biogeochemistry: a synthesis of current knowledge.

Authors:  J A Mikucki; P A Lee; D Ghosh; A M Purcell; A C Mitchell; K D Mankoff; A T Fisher; S Tulaczyk; S Carter; M R Siegfried; H A Fricker; T Hodson; J Coenen; R Powell; R Scherer; T Vick-Majors; A A Achberger; B C Christner; M Tranter
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2016-01-28       Impact factor: 4.226

4.  Biodiversity of methanogenic and other archaea in the permanently frozen Lake Fryxell, Antarctica.

Authors:  Elizabeth A Karr; Joshua M Ng; Sara M Belchik; W Matthew Sattley; Michael T Madigan; Laurie A Achenbach
Journal:  Appl Environ Microbiol       Date:  2006-02       Impact factor: 4.792

5.  Characterization of viable bacteria from Siberian permafrost by 16S rDNA sequencing.

Authors:  T Shi; R H Reeves; D A Gilichinsky; E I Friedmann
Journal:  Microb Ecol       Date:  1997 May-Jun       Impact factor: 4.552

6.  Bacterial and archaeal diversity in sediments of west Lake Bonney, McMurdo Dry Valleys, Antarctica.

Authors:  Chao Tang; Michael T Madigan; Brian Lanoil
Journal:  Appl Environ Microbiol       Date:  2012-11-26       Impact factor: 4.792

7.  Microbiome of the upper troposphere: species composition and prevalence, effects of tropical storms, and atmospheric implications.

Authors:  Natasha DeLeon-Rodriguez; Terry L Lathem; Luis M Rodriguez-R; James M Barazesh; Bruce E Anderson; Andreas J Beyersdorf; Luke D Ziemba; Michael Bergin; Athanasios Nenes; Konstantinos T Konstantinidis
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-28       Impact factor: 11.205

8.  Cell proliferation at 122 degrees C and isotopically heavy CH4 production by a hyperthermophilic methanogen under high-pressure cultivation.

Authors:  Ken Takai; Kentaro Nakamura; Tomohiro Toki; Urumu Tsunogai; Masayuki Miyazaki; Junichi Miyazaki; Hisako Hirayama; Satoshi Nakagawa; Takuro Nunoura; Koki Horikoshi
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-29       Impact factor: 11.205

9.  Phasing amplicon sequencing on Illumina Miseq for robust environmental microbial community analysis.

Authors:  Liyou Wu; Chongqing Wen; Yujia Qin; Huaqun Yin; Qichao Tu; Joy D Van Nostrand; Tong Yuan; Menting Yuan; Ye Deng; Jizhong Zhou
Journal:  BMC Microbiol       Date:  2015-06-19       Impact factor: 3.605

10.  Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: model systems for the study of autotroph-heterotroph interactions.

Authors:  Jessica K Cole; Janine R Hutchison; Ryan S Renslow; Young-Mo Kim; William B Chrisler; Heather E Engelmann; Alice C Dohnalkova; Dehong Hu; Thomas O Metz; Jim K Fredrickson; Stephen R Lindemann
Journal:  Front Microbiol       Date:  2014-04-07       Impact factor: 5.640

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  1 in total

1.  Cultivation and characterization of snowbound microorganisms from the South Pole.

Authors:  Mackenzie K Hayward; Emma D Dewey; Kathryn N Shaffer; Austin M Huntington; Brad M Burchell; Lynn M Stokes; Brittney C Alexander; Janessa E George; Megan L Kempher; Samantha B Joye; Michael T Madigan; W Matthew Sattley
Journal:  Extremophiles       Date:  2021-02-15       Impact factor: 2.395

  1 in total

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