Literature DB >> 28678399

A Guide to Creating and Testing New INTRSECT Constructs.

Lief E Fenno1,2, Joanna Mattis3, Charu Ramakrishnan1, Karl Deisseroth1,2,4,5.   

Abstract

As the power of genetically encoded interventional and observational tools for neuroscience expands, the boundaries of experimental design are increasingly defined by limits in selectively expressing these tools in relevant cell types. Single-recombinase-dependent expression systems have been widely used as a means to restrict gene expression based on single features by combining recombinase-dependent viruses with recombinase-expressing transgenic animals. This protocol details how to create INTRSECT constructs and use multiple recombinases to achieve targeting of a desired gene to subsets of neurons that are defined by multiple genetic and/or topological features. This method includes the design and utilization of both viruses and transgenic animals: these tools are inherently flexible and modular and may be used in different combinations to achieve the desired gene expression pattern. © 2017 by John Wiley & Sons, Inc.
Copyright © 2017 John Wiley & Sons, Inc.

Entities:  

Keywords:  INTRSECT; neuroscience; optogenetics; synthetic biology; virus

Mesh:

Substances:

Year:  2017        PMID: 28678399      PMCID: PMC6892587          DOI: 10.1002/cpns.30

Source DB:  PubMed          Journal:  Curr Protoc Neurosci        ISSN: 1934-8576


  43 in total

1.  Optogenetics in neural systems.

Authors:  Ofer Yizhar; Lief E Fenno; Thomas J Davidson; Murtaza Mogri; Karl Deisseroth
Journal:  Neuron       Date:  2011-07-14       Impact factor: 17.173

2.  Statistical features of human exons and their flanking regions.

Authors:  M Q Zhang
Journal:  Hum Mol Genet       Date:  1998-05       Impact factor: 6.150

3.  New rabies virus variants for monitoring and manipulating activity and gene expression in defined neural circuits.

Authors:  Fumitaka Osakada; Takuma Mori; Ali H Cetin; James H Marshel; Beatriz Virgen; Edward M Callaway
Journal:  Neuron       Date:  2011-08-25       Impact factor: 17.173

4.  Production and characterization of adeno-associated viral vectors.

Authors:  Joshua C Grieger; Vivian W Choi; R Jude Samulski
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

5.  A lentiviral strategy for highly efficient retrograde gene transfer by pseudotyping with fusion envelope glycoprotein.

Authors:  Shigeki Kato; Kenta Kobayashi; Ken-ichi Inoue; Masahito Kuramochi; Tomoaki Okada; Hiroyuki Yaginuma; Kinjiro Morimoto; Takashi Shimada; Masahiko Takada; Kazuto Kobayashi
Journal:  Hum Gene Ther       Date:  2011-01-27       Impact factor: 5.695

6.  Phasic firing in dopaminergic neurons is sufficient for behavioral conditioning.

Authors:  Hsing-Chen Tsai; Feng Zhang; Antoine Adamantidis; Garret D Stuber; Antonello Bonci; Luis de Lecea; Karl Deisseroth
Journal:  Science       Date:  2009-04-23       Impact factor: 47.728

7.  In vitro and in vivo gene therapy vector evolution via multispecies interbreeding and retargeting of adeno-associated viruses.

Authors:  Dirk Grimm; Joyce S Lee; Lora Wang; Tushar Desai; Bassel Akache; Theresa A Storm; Mark A Kay
Journal:  J Virol       Date:  2008-04-09       Impact factor: 5.103

8.  An update on canine adenovirus type 2 and its vectors.

Authors:  Thierry Bru; Sara Salinas; Eric J Kremer
Journal:  Viruses       Date:  2010-09-27       Impact factor: 5.818

9.  High-efficiency FLP and PhiC31 site-specific recombination in mammalian cells.

Authors:  Christopher S Raymond; Philippe Soriano
Journal:  PLoS One       Date:  2007-01-17       Impact factor: 3.240

10.  Serotonin engages an anxiety and fear-promoting circuit in the extended amygdala.

Authors:  Catherine A Marcinkiewcz; Christopher M Mazzone; Giuseppe D'Agostino; Lindsay R Halladay; J Andrew Hardaway; Jeffrey F DiBerto; Montserrat Navarro; Nathan Burnham; Claudia Cristiano; Cayce E Dorrier; Gregory J Tipton; Charu Ramakrishnan; Tamas Kozicz; Karl Deisseroth; Todd E Thiele; Zoe A McElligott; Andrew Holmes; Lora K Heisler; Thomas L Kash
Journal:  Nature       Date:  2016-08-24       Impact factor: 49.962

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  6 in total

1.  Mapping Brain-Wide Afferent Inputs of Parvalbumin-Expressing GABAergic Neurons in Barrel Cortex Reveals Local and Long-Range Circuit Motifs.

Authors:  Georg Hafner; Mirko Witte; Julien Guy; Nidhi Subhashini; Lief E Fenno; Charu Ramakrishnan; Yoon Seok Kim; Karl Deisseroth; Edward M Callaway; Martina Oberhuber; Karl-Klaus Conzelmann; Jochen F Staiger
Journal:  Cell Rep       Date:  2019-09-24       Impact factor: 9.423

2.  Regulation of dark period sleep by the Amygdala: A microinjection and optogenetics study.

Authors:  Laurie L Wellman; Gyorgy Lonart; Austin M Adkins; Larry D Sanford
Journal:  Brain Res       Date:  2022-02-04       Impact factor: 3.252

Review 3.  Durability of transgene expression after rAAV gene therapy.

Authors:  Manish Muhuri; Daniel I Levy; Martin Schulz; Douglas McCarty; Guangping Gao
Journal:  Mol Ther       Date:  2022-03-10       Impact factor: 12.910

4.  tTARGIT AAVs mediate the sensitive and flexible manipulation of intersectional neuronal populations in mice.

Authors:  Paul V Sabatini; Jine Wang; Alan C Rupp; Alison H Affinati; Jonathan N Flak; Chien Li; David P Olson; Martin G Myers
Journal:  Elife       Date:  2021-03-11       Impact factor: 8.140

Review 5.  Adeno-Associated Virus Technologies and Methods for Targeted Neuronal Manipulation.

Authors:  Leila Haery; Benjamin E Deverman; Katherine S Matho; Ali Cetin; Kenton Woodard; Connie Cepko; Karen I Guerin; Meghan A Rego; Ina Ersing; Susanna M Bachle; Joanne Kamens; Melina Fan
Journal:  Front Neuroanat       Date:  2019-11-26       Impact factor: 3.856

6.  VikAD, a Vika site-specific recombinase-based system for efficient and scalable helper-dependent adenovirus production.

Authors:  Stacia Phillips; Paula Valino Ramos; Priyadharishini Veeraraghavan; Samuel M Young
Journal:  Mol Ther Methods Clin Dev       Date:  2021-12-06       Impact factor: 6.698

  6 in total

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