Literature DB >> 28674226

Identification and validation of reference genes for gene expression studies in sweet osmanthus (Osmanthus fragrans) based on transcriptomic sequence data.

Hongna Mu1, Taoze Sun, Chen Xu, Lianggui Wang, Yuanzheng Yue, Huogen Li, Xiulian Yang.   

Abstract

Accurate normalized data is a primary requisite for quantifying gene expression using RT-qPCR technology. Despite this importance, however, suitable reference genes in Osmanthus fragrans are not available. In this study, seven potential candidate reference genes (OfL25-1, OfL25-10, OfRP2, OfTUA, OfTUB3, OfUBQ2 and Of18S) were evaluated to determine which one would be the most reliable reference genes. The expression levels of the candidate reference genes were analysed by RT-qPCR in flower, leaf, pedicel, blossom bud tissues, as well as in floral organs at different developmental stages.GeNormand NormFinderwere used to statistically analyse transcript variation.Results indicated that OfRP2 and OfL25-10 were the optimal reference genes for use in RT-qPCR when analysing different stages of floral development; while OfTUB3 and OfL25-1 were optimal across tissues. The selected reference genes were used to examineOfMYB1 expression. The results appeared to be useful for future gene expression analyses aiming to characterize developmental stages and tissues of O. fragrans.

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Year:  2017        PMID: 28674226     DOI: 10.1007/s12041-017-0769-8

Source DB:  PubMed          Journal:  J Genet        ISSN: 0022-1333            Impact factor:   1.166


  25 in total

1.  Normalization of reverse transcription quantitative-PCR with housekeeping genes in rice.

Authors:  Bo-Ra Kim; Hee-Young Nam; Soo-Un Kim; Su-Il Kim; Yung-Jin Chang
Journal:  Biotechnol Lett       Date:  2003-11       Impact factor: 2.461

2.  Large-scale identification of tubulin-binding proteins provides insight on subcellular trafficking, metabolic channeling, and signaling in plant cells.

Authors:  Simon D X Chuong; Allen G Good; Gregory J Taylor; Michelle C Freeman; Greg B G Moorhead; Douglas G Muench
Journal:  Mol Cell Proteomics       Date:  2004-07-12       Impact factor: 5.911

3.  Quantification of mRNA using real-time RT-PCR.

Authors:  Tania Nolan; Rebecca E Hands; Stephen A Bustin
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

4.  Selection of appropriate reference genes for gene expression studies by quantitative real-time polymerase chain reaction in cucumber.

Authors:  Hongjian Wan; Zhenguo Zhao; Chuntao Qian; Yihu Sui; Ahmed Abbas Malik; Jinfeng Chen
Journal:  Anal Biochem       Date:  2009-12-11       Impact factor: 3.365

5.  Selection of reference genes for gene expression studies in zucchini (Cucurbita pepo) using qPCR.

Authors:  Angeles Obrero; Jose V Die; Belén Román; Pedro Gómez; Salvador Nadal; Clara I González-Verdejo
Journal:  J Agric Food Chem       Date:  2011-04-22       Impact factor: 5.279

6.  Identification and evaluation of new reference genes in Gossypium hirsutum for accurate normalization of real-time quantitative RT-PCR data.

Authors:  Sinara Artico; Sarah M Nardeli; Osmundo Brilhante; Maria Fátima Grossi-de-Sa; Marcio Alves-Ferreira
Journal:  BMC Plant Biol       Date:  2010-03-21       Impact factor: 4.215

7.  Seasonal variation in transcript abundance in cork tissue analyzed by real time RT-PCR.

Authors:  Marçal Soler; Olga Serra; Marisa Molinas; Emili García-Berthou; Antònia Caritat; Mercè Figueras
Journal:  Tree Physiol       Date:  2008-05       Impact factor: 4.196

8.  Validation of reference genes for quantitative real-time PCR during leaf and flower development in Petunia hybrida.

Authors:  Izaskun Mallona; Sandra Lischewski; Julia Weiss; Bettina Hause; Marcos Egea-Cortines
Journal:  BMC Plant Biol       Date:  2010-01-07       Impact factor: 4.215

9.  Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes.

Authors:  Jo Vandesompele; Katleen De Preter; Filip Pattyn; Bruce Poppe; Nadine Van Roy; Anne De Paepe; Frank Speleman
Journal:  Genome Biol       Date:  2002-06-18       Impact factor: 13.583

10.  Validation of endogenous reference genes in Buglossoides arvensis for normalizing RT-qPCR-based gene expression data.

Authors:  Vijay J Gadkar; Martin Filion
Journal:  Springerplus       Date:  2015-04-15
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  3 in total

1.  Identification and selection of reference genes for gene expression analysis by quantitative real-time PCR in Suaeda glauca's response to salinity.

Authors:  Meng Wang; Tingting Ren; Prince Marowa; Haina Du; Zongchang Xu
Journal:  Sci Rep       Date:  2021-04-21       Impact factor: 4.379

2.  Identification of Reference Genes for RT-qPCR Analysis in Gleditsia microphylla under Abiotic Stress and Hormone Treatment.

Authors:  Jiaqi Yang; Fengying Han; Li Yang; Jin Wang; Feng Jin; An Luo; Fuyong Zhao
Journal:  Genes (Basel)       Date:  2022-07-10       Impact factor: 4.141

3.  The First Genetic Map in Sweet Osmanthus (Osmanthus fragrans Lour.) Using Specific Locus Amplified Fragment Sequencing.

Authors:  Yanxia He; Wangjun Yuan; Meifang Dong; Yuanji Han; Fude Shang
Journal:  Front Plant Sci       Date:  2017-09-22       Impact factor: 5.753

  3 in total

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