Literature DB >> 28671678

Molecular basis of the evolution of alternative tyrosine biosynthetic routes in plants.

Craig A Schenck1, Cynthia K Holland2, Matthew R Schneider1, Yusen Men1, Soon Goo Lee2, Joseph M Jez2, Hiroshi A Maeda1.   

Abstract

L-Tyrosine (Tyr) is essential for protein synthesis and is a precursor of numerous specialized metabolites crucial for plant and human health. Tyr can be synthesized via two alternative routes by different key regulatory TyrA family enzymes, prephenate dehydrogenase (PDH, also known as TyrAp) or arogenate dehydrogenase (ADH, also known as TyrAa), representing a unique divergence of primary metabolic pathways. The molecular foundation underlying the evolution of these alternative Tyr pathways is currently unknown. Here we characterized recently diverged plant PDH and ADH enzymes, obtained the X-ray crystal structure of soybean PDH, and identified a single amino acid residue that defines TyrA substrate specificity and regulation. Structures of mutated PDHs co-crystallized with Tyr indicate that substitutions of Asn222 confer ADH activity and Tyr sensitivity. Reciprocal mutagenesis of the corresponding residue in divergent plant ADHs further introduced PDH activity and relaxed Tyr sensitivity, highlighting the critical role of this residue in TyrA substrate specificity that underlies the evolution of alternative Tyr biosynthetic pathways in plants.

Entities:  

Mesh:

Substances:

Year:  2017        PMID: 28671678     DOI: 10.1038/nchembio.2414

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  63 in total

1.  Evolutionary implications of different types of microbial enzymology for L-tyrosine biosynthesis.

Authors:  R A Jensen; D L Pierson
Journal:  Nature       Date:  1975-04-24       Impact factor: 49.962

2.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

3.  The evolutionary history of lysine biosynthesis pathways within eukaryotes.

Authors:  Guifré Torruella; Hiroshi Suga; Marta Riutort; Juli Peretó; Iñaki Ruiz-Trillo
Journal:  J Mol Evol       Date:  2009-08-11       Impact factor: 2.395

Review 4.  The shikimate pathway and aromatic amino Acid biosynthesis in plants.

Authors:  Hiroshi Maeda; Natalia Dudareva
Journal:  Annu Rev Plant Biol       Date:  2012       Impact factor: 26.379

5.  Biochemical properties and subcellular localization of tyrosine aminotransferases in Arabidopsis thaliana.

Authors:  Minmin Wang; Kyoko Toda; Hiroshi A Maeda
Journal:  Phytochemistry       Date:  2016-10-07       Impact factor: 4.072

6.  Tyrosine biosynthesis in Sorghum bicolor: isolation and regulatory properties of arogenate dehydrogenase.

Authors:  J A Connelly; E E Conn
Journal:  Z Naturforsch C J Biosci       Date:  1986 Jan-Feb

Review 7.  Tyrosine, phenylalanine, and catecholamine synthesis and function in the brain.

Authors:  John D Fernstrom; Madelyn H Fernstrom
Journal:  J Nutr       Date:  2007-06       Impact factor: 4.798

8.  Plastid-localized amino acid biosynthetic pathways of Plantae are predominantly composed of non-cyanobacterial enzymes.

Authors:  Adrian Reyes-Prieto; Ahmed Moustafa
Journal:  Sci Rep       Date:  2012-12-11       Impact factor: 4.379

9.  EuroPineDB: a high-coverage web database for maritime pine transcriptome.

Authors:  Noé Fernández-Pozo; Javier Canales; Darío Guerrero-Fernández; David P Villalobos; Sara M Díaz-Moreno; Rocío Bautista; Arantxa Flores-Monterroso; M Ángeles Guevara; Pedro Perdiguero; Carmen Collada; M Teresa Cervera; Alvaro Soto; Ricardo Ordás; Francisco R Cantón; Concepción Avila; Francisco M Cánovas; M Gonzalo Claros
Journal:  BMC Genomics       Date:  2011-07-15       Impact factor: 3.969

10.  Legume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family.

Authors:  Sudhansu Dash; Jacqueline D Campbell; Ethalinda K S Cannon; Alan M Cleary; Wei Huang; Scott R Kalberer; Vijay Karingula; Alex G Rice; Jugpreet Singh; Pooja E Umale; Nathan T Weeks; Andrew P Wilkey; Andrew D Farmer; Steven B Cannon
Journal:  Nucleic Acids Res       Date:  2015-11-05       Impact factor: 16.971

View more
  10 in total

Review 1.  Harnessing evolutionary diversification of primary metabolism for plant synthetic biology.

Authors:  Hiroshi A Maeda
Journal:  J Biol Chem       Date:  2019-09-26       Impact factor: 5.157

2.  TAT1 and TAT2 tyrosine aminotransferases have both distinct and shared functions in tyrosine metabolism and degradation in Arabidopsis thaliana.

Authors:  Minmin Wang; Kyoko Toda; Anna Block; Hiroshi A Maeda
Journal:  J Biol Chem       Date:  2019-01-10       Impact factor: 5.157

Review 3.  Using interdisciplinary, phylogeny-guided approaches to understand the evolution of plant metabolism.

Authors:  Craig A Schenck; Lucas Busta
Journal:  Plant Mol Biol       Date:  2021-11-23       Impact factor: 4.076

4.  Moonlighting proteins: putting the spotlight on enzymes.

Authors:  Sara Abolhassani Rad; Emily J Clayton; Emily J Cornelius; Travis R Howes; Susanne E Kohalmi
Journal:  Plant Signal Behav       Date:  2018-09-25

5.  Structural and biochemical analysis of Bacillus anthracis prephenate dehydrogenase reveals an unusual mode of inhibition by tyrosine via the ACT domain.

Authors:  Ivan G Shabalin; Artyom Gritsunov; Jing Hou; Joanna Sławek; Charles D Miks; David R Cooper; Wladek Minor; Dinesh Christendat
Journal:  FEBS J       Date:  2019-12-26       Impact factor: 5.542

6.  The entry reaction of the plant shikimate pathway is subjected to highly complex metabolite-mediated regulation.

Authors:  Ryo Yokoyama; Marcos V V de Oliveira; Bailey Kleven; Hiroshi A Maeda
Journal:  Plant Cell       Date:  2021-05-05       Impact factor: 11.277

7.  Conserved Molecular Mechanism of TyrA Dehydrogenase Substrate Specificity Underlying Alternative Tyrosine Biosynthetic Pathways in Plants and Microbes.

Authors:  Craig A Schenck; Yusen Men; Hiroshi A Maeda
Journal:  Front Mol Biosci       Date:  2017-11-07

8.  Robust predictions of specialized metabolism genes through machine learning.

Authors:  Bethany M Moore; Peipei Wang; Pengxiang Fan; Bryan Leong; Craig A Schenck; John P Lloyd; Melissa D Lehti-Shiu; Robert L Last; Eran Pichersky; Shin-Han Shiu
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-23       Impact factor: 11.205

9.  Revisiting the dual pathway hypothesis of Chorismate production in plants.

Authors:  Joseph H Lynch
Journal:  Hortic Res       Date:  2022-03-14       Impact factor: 7.291

Review 10.  Variation on a theme: the structures and biosynthesis of specialized fatty acid natural products in plants.

Authors:  Samuel Scott; Edgar B Cahoon; Lucas Busta
Journal:  Plant J       Date:  2022-07-18       Impact factor: 7.091

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.