Literature DB >> 28671300

Transcription-dependent association of HDAC2 with active chromatin.

Sanzida Jahan1, Jian-Min Sun1, Shihua He1, James R Davie1.   

Abstract

Histone deacetylase 2 (HDAC2) catalyzes deacetylation of histones at the promoter and coding regions of transcribed genes and regulates chromatin structure and transcription. To explore the role of HDAC2 and phosphorylated HDAC2 in gene regulation, we studied the location along transcribed genes, the mode of recruitment and the associated proteins with HDAC2 and HDAC2S394ph in chicken polychromatic erythrocytes. We show that HDAC2 and HDAC2S394ph are associated with transcriptionally active chromatin and located in the interchromatin channels. HDAC2S394ph was present primarly at the upstream promoter region of the transcribed CA2 and GAS41 genes, while total HDAC2 was also found within the coding region of the CA2 gene. Recruitment of HDAC2 to these genes was partially dependent upon on-going transcription. Unmodified HDAC2 was associated with RNA binding proteins and interacted with RNA bound to the initiating and elongating forms of RNA polymerase II. HDAC2S394ph was not associated with RNA polymerase II. These results highlight the differential properties of unmodified and phosphorylated HDAC2 and the organization of acetylated transcriptionally active chromatin in the chicken polychromatic erythrocyte.
© 2017 Wiley Periodicals, Inc.

Entities:  

Keywords:  RNA binding protein; RNA-protein interaction; chromatin fractionation; histone acetylation; histone deacetylase

Mesh:

Substances:

Year:  2017        PMID: 28671300     DOI: 10.1002/jcp.26078

Source DB:  PubMed          Journal:  J Cell Physiol        ISSN: 0021-9541            Impact factor:   6.384


  6 in total

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2.  De Novo Assembly and Comparative Transcriptome Profiling of Anser anser and Anser cygnoides Geese Species' Embryonic Skin Feather Follicles.

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3.  Highly Sensitive and Multiplexed Protein Imaging With Cleavable Fluorescent Tyramide Reveals Human Neuronal Heterogeneity.

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Journal:  Front Cell Dev Biol       Date:  2021-01-08

4.  Multiplexed In Situ Protein Profiling with High-Performance Cleavable Fluorescent Tyramide.

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Journal:  Molecules       Date:  2021-04-12       Impact factor: 4.411

5.  Silencing of CREB Inhibits HDAC2/TLR4/NF-κB Cascade to Relieve Severe Acute Pancreatitis-Induced Myocardial Injury.

Authors:  Longfei Pan; Zequn Niu; Yanxia Gao; Liming Wang; Zhong Liu; Jie Liu; Jiangli Sun; Honghong Pei
Journal:  Inflammation       Date:  2021-03-16       Impact factor: 4.092

Review 6.  Transcriptionally Active Chromatin-Lessons Learned from the Chicken Erythrocyte Chromatin Fractionation.

Authors:  Tasnim H Beacon; James R Davie
Journal:  Cells       Date:  2021-05-30       Impact factor: 6.600

  6 in total

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