Literature DB >> 28670581

Mutant Cas9-transcriptional activator activates HIV-1 in U1 cells in the presence and absence of LTR-specific guide RNAs.

Veronica Kim1, Brian M Mears1, Bonita H Powell1, Kenneth W Witwer.   

Abstract

CRISPR/Cas9 systems have been advanced as promising tools in the HIV eradication armamentarium for sequence-specific disruption or latency reversal. Enthusiasm is balanced by concerns about off-target host genome modification and effects on HIV evolution. In the chronically HIV-1-infected U1 promonocytic latency model, we have confirmed stimulation of HIV-1 production by a mutant Cas9-transcriptional activator and guide RNAs with two guide RNAs apparently more potent than one. However, significant increases were also observed in the absence of guide RNAs. We encourage continued careful evaluation of non-sequence-specific and off-target effects of Cas9-mediated approaches.

Entities:  

Year:  2017        PMID: 28670581      PMCID: PMC5493433          DOI: 10.19185/matters.201611000027

Source DB:  PubMed          Journal:  Matters (Zur)        ISSN: 2297-8240


  16 in total

1.  The cellular TAR RNA binding protein, TRBP, promotes HIV-1 replication primarily by inhibiting the activation of double-stranded RNA-dependent kinase PKR.

Authors:  Viraj R Sanghvi; Laura F Steel
Journal:  J Virol       Date:  2011-09-21       Impact factor: 5.103

Review 2.  How specific is CRISPR/Cas9 really?

Authors:  Henriette O'Geen; Abigail S Yu; David J Segal
Journal:  Curr Opin Chem Biol       Date:  2015-10-24       Impact factor: 8.822

3.  RNA-directed gene editing specifically eradicates latent and prevents new HIV-1 infection.

Authors:  Wenhui Hu; Rafal Kaminski; Fan Yang; Yonggang Zhang; Laura Cosentino; Fang Li; Biao Luo; David Alvarez-Carbonell; Yoelvis Garcia-Mesa; Jonathan Karn; Xianming Mo; Kamel Khalili
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-21       Impact factor: 11.205

Review 4.  Off-target effects of engineered nucleases.

Authors:  Jiing-Kuan Yee
Journal:  FEBS J       Date:  2016-06-06       Impact factor: 5.542

5.  Excision of HIV-1 DNA by gene editing: a proof-of-concept in vivo study.

Authors:  R Kaminski; R Bella; C Yin; J Otte; P Ferrante; H E Gendelman; H Li; R Booze; J Gordon; W Hu; K Khalili
Journal:  Gene Ther       Date:  2016-05-19       Impact factor: 5.250

6.  CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering.

Authors:  Prashant Mali; John Aach; P Benjamin Stranges; Kevin M Esvelt; Mark Moosburner; Sriram Kosuri; Luhan Yang; George M Church
Journal:  Nat Biotechnol       Date:  2013-08-01       Impact factor: 54.908

7.  CRISPR/gRNA-directed synergistic activation mediator (SAM) induces specific, persistent and robust reactivation of the HIV-1 latent reservoirs.

Authors:  Yonggang Zhang; Chaoran Yin; Ting Zhang; Fang Li; Wensheng Yang; Rafal Kaminski; Philip Regis Fagan; Raj Putatunda; Won-Bin Young; Kamel Khalili; Wenhui Hu
Journal:  Sci Rep       Date:  2015-11-05       Impact factor: 4.379

8.  Harnessing the CRISPR/Cas9 system to disrupt latent HIV-1 provirus.

Authors:  Hirotaka Ebina; Naoko Misawa; Yuka Kanemura; Yoshio Koyanagi
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

9.  Multiplexed activation of endogenous genes by CRISPR-on, an RNA-guided transcriptional activator system.

Authors:  Albert W Cheng; Haoyi Wang; Hui Yang; Linyu Shi; Yarden Katz; Thorold W Theunissen; Sudharshan Rangarajan; Chikdu S Shivalila; Daniel B Dadon; Rudolf Jaenisch
Journal:  Cell Res       Date:  2013-08-27       Impact factor: 25.617

10.  Potent and Targeted Activation of Latent HIV-1 Using the CRISPR/dCas9 Activator Complex.

Authors:  Sheena M Saayman; Daniel C Lazar; Tristan A Scott; Jonathan R Hart; Mayumi Takahashi; John C Burnett; Vicente Planelles; Kevin V Morris; Marc S Weinberg
Journal:  Mol Ther       Date:  2015-11-19       Impact factor: 11.454

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  7 in total

1.  Broad-Spectrum and Personalized Guide RNAs for CRISPR/Cas9 HIV-1 Therapeutics.

Authors:  Will Dampier; Neil T Sullivan; Joshua Chang Mell; Vanessa Pirrone; Garth D Ehrlich; Cheng-Han Chung; Alexander G Allen; Mathew DeSimone; Wen Zhong; Katherine Kercher; Shendra Passic; Jean W Williams; Zsofia Szep; Kamel Khalili; Jeffrey M Jacobson; Michael R Nonnemacher; Brian Wigdahl
Journal:  AIDS Res Hum Retroviruses       Date:  2018-08-27       Impact factor: 2.205

2.  Designing broad-spectrum anti-HIV-1 gRNAs to target patient-derived variants.

Authors:  Will Dampier; Neil T Sullivan; Cheng-Han Chung; Joshua Chang Mell; Michael R Nonnemacher; Brian Wigdahl
Journal:  Sci Rep       Date:  2017-10-31       Impact factor: 4.379

Review 3.  Application of CRISPR/Cas9-Based Gene Editing in HIV-1/AIDS Therapy.

Authors:  Qiaoqiao Xiao; Deyin Guo; Shuliang Chen
Journal:  Front Cell Infect Microbiol       Date:  2019-03-22       Impact factor: 5.293

Review 4.  Reduce and Control: A Combinatorial Strategy for Achieving Sustained HIV Remissions in the Absence of Antiretroviral Therapy.

Authors:  Roland Schwarzer; Andrea Gramatica; Warner C Greene
Journal:  Viruses       Date:  2020-02-08       Impact factor: 5.048

Review 5.  Updates on CRISPR-based gene editing in HIV-1/AIDS therapy.

Authors:  Zhihao Zhang; Wei Hou; Shuliang Chen
Journal:  Virol Sin       Date:  2022-01-19       Impact factor: 4.327

6.  Comprehensive off-target analysis of dCas9-SAM-mediated HIV reactivation via long noncoding RNA and mRNA profiling.

Authors:  Yonggang Zhang; Gustavo Arango; Fang Li; Xiao Xiao; Raj Putatunda; Jun Yu; Xiao-Feng Yang; Hong Wang; Layne T Watson; Liqing Zhang; Wenhui Hu
Journal:  BMC Med Genomics       Date:  2018-09-10       Impact factor: 3.063

7.  Novel gRNA design pipeline to develop broad-spectrum CRISPR/Cas9 gRNAs for safe targeting of the HIV-1 quasispecies in patients.

Authors:  Neil T Sullivan; Will Dampier; Cheng-Han Chung; Alexander G Allen; Andrew Atkins; Vanessa Pirrone; Greg Homan; Shendra Passic; Jean Williams; Wen Zhong; Katherine Kercher; Mathew Desimone; Luna Li; Gregory C Antell; Joshua Chang Mell; Garth D Ehrlich; Zsofia Szep; Jeffrey M Jacobson; Michael R Nonnemacher; Brian Wigdahl
Journal:  Sci Rep       Date:  2019-11-19       Impact factor: 4.379

  7 in total

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