| Literature DB >> 28669354 |
Ye Ge1,2, Qiu-Cheng Yao2, Xian-Fu Wang3, Zhi-Qiang Fan4, Guo-Hua Deng5, Hong-Liang Chai6, Hua-Lan Chen2, Yu-Ping Hua7.
Abstract
BACKGROUND: As the natural hosts of avian influenza viruses (AIVs), aquatic and migratory birds provide a gene pool for genetic transfer among species and across species, forming transient "genome constellations." This work describes the phylogenetic dynamics of H1NX based on the complete molecular characterization of eight genes of viruses that were collected from 2014 to 2015 in Anhui Province, China.Entities:
Keywords: Anseriformes; Epidemic; H1N1; Pathogenic; Phylogenetic
Mesh:
Year: 2017 PMID: 28669354 PMCID: PMC5494855 DOI: 10.1186/s40249-017-0304-4
Source DB: PubMed Journal: Infect Dis Poverty ISSN: 2049-9957 Impact factor: 4.520
Fig. 1Phylogenetic analysis of the surface genes of H1 subtype AIVs isolated from 2014–2015 by maximum likelihood. The phylogenetic trees were generated with the MAGE 6.0 software package. The phylogenetic trees of the HA (a), N1(b) and N2(c) genes used no root tree. The sequences of viruses listed in black were downloaded from available databases; viruses listed in red, yellow, and green were sequenced in this study. Those listed in cyan and italicized were obtained from the paper by Wang GJ. Abbreviations: CK, chicken; DK, duck; GS, goose; SW, swine; WDK, wild duck; EN, environment
The viruses with the highest similarity in GenBank
| Virus stains | The highest similarity (%) | |||||||
|---|---|---|---|---|---|---|---|---|
| PB2 | PB1 | PA | HA | NP | NA | M | NS | |
| A/Anseriformes/Anhui/S3/2014(H1N1) | A/duck/Vietnam/LBM798/2014(H3N6) | A/wildbird/Jiangxi/34458/2013(H7N7) | A/mallard/Republic of Georgia/13/2011(H6N2) | A/duck/Hokkaido/327/2009 (H1N3) | A/duck/Taiwan/11213/2013(H5N2) | A/mallard/Republic of Georgia/4/2012 (H1N1) | A/duck/Vietnam/LBM798/2014(H3N6) | A/duck/Vietnam/LBM533/2013(H3N6) |
| A/Anseriformes/Anhui/S61/2014(H1N2) | A/common teal/Mongolia/1920/2011(H4N6) | A/duck/Mongolia/200/2015(H3N8 | A/Armenian gull/Republic of Georgia/2/2012(H13N2) | A/duck/Hokkaido/327/2009 (H1N4) | A/duck/Quang Ninh/14/2013(H3N6) | A/mallard/Republic of Georgia/13/201 (H6N2) | A/duck/Jiangxi/32213/2013(H7N6) | A/duck/Vietnam/LBM533/2013(H3N6) |
| A/Anseriformes/Anhui/S107/2014(H1N1) | A/duck/Vietnam/LBM798/2014(H3N6) | A/wildbird/Jiangxi/34458/2013(H7N7) | A/mallard/Republic of Georgia/13/2011(H6N2) | A/duck/Hokkaido/327/2009 (H1N5) | A/duck/Taiwan/11213/2013(H5N2) | A/mallard/Republic of Georgia/4/2012 (H1N1) | A/duck/Vietnam/LBM798/2014(H3N6) | A/duck/Vietnam/LBM533/2013(H3N6) |
| A/Anseriformes/Anhui/L6/2014(H1N2) | A/bean goose/Korea/220/2011(H9N2) | A/beangoose/Korea/220/2011(H9N2) | A/beangoose/Korea/220/2011(H9N2) | A/Mallard/Republic of Georgia/4/2012 (H1N1) | A/egret/Hunan/1/12(H9N2) | A/beangoose/Korea/220/2011 (H9N2) | A/wildwaterfowl/Dongting/C2150/2011(H9N2) | A/beangoose/Korea/220/2011(H9N2) |
| A/Anseriformes/Anhui/L25/2014(H1N1) | A/duck/Vietnam/LBM798/2014(H3N6) | A/wildbird/Jiangxi/34458/2013(H7N7) | A/mallard/Republic of Georgia/13/2011(H6N2) | A/duck/Hokkaido/327/2009 (H1N7) | A/egret/Hunan/1/12(H9N2) | A/mallard/Republic of Georgia/4/2012 (H1N1) | A/duck/Vietnam/LBM798/2014(H3N6) | A/duck/Vietnam/LBM533/2013(H3N6) |
| A/Anseriformes/Anhui/L167/2014(H1N1) | A/ruddy/Mongolia/590c2/2009(H11N2) | A/wildbird/Wuhan/CDHN09/2015(H6N2) | A/commonteal/Mongolia/1920/2011(H4N6) | A/duck/Hokkaido/327/2009 (H1N8) | A/duck/Japan/11OG1032/2011(H5N2) | A/mallard/Republic of Georgia/4/2012 (H1N2) | A/wild waterfowl/Hong Kong/MPP1311/13(H2N9) | A/duck/Vietnam/LBM798/2014(H3N6) |
| A/Anseriformes/Anhui/L259/2014(H1N1) | A/duck/Vietnam/LBM798/2014(H3N6) | A/wildbird/Jiangxi/34458/2013(H7N7) | A/mallard/Republic of Georgia/13/2011(H6N2) | A/duck/Hokkaido/327/2009 (H1N9) | A/egret/Hunan/1/12(H9N2) | A/mallard/Republic of Georgia/4/2012 (H1N3) | A/duck/Vietnam/LBM798/2014(H3N6) | A/duck/Vietnam/LBM533/2013(H3N6) |
Fig. 2Phylogenetic analysis of the inner genes of H1 subtype AIVs isolated from 2014–2015 by maximum likelihood. The colours of the virus names in the PB2(a), PB1(b), PA(c), NP(d), M(e), and NS(2f) trees match those used in the genotype table. The phylogenetic trees of inner genes were rooted to A/Spanish/1/1918 (H1N1). The sequences of viruses listed in black were downloaded from GenBank; viruses listed in red, yellow, and green were sequenced in this study. Abbreviations: CK, chicken; DK, duck; GS, goose; SW, swine; WDK, wild duck; EN, environment
Fig. 3Map of the genotypic evolution of H1Nx viruses. The eight gene segments are indicated at the top of each bar
Fig. 4Simplified schematic showing the putative genomic composition of the novel reassortant H1N2 and H1N1 avian influenza viruses described in this study. The eight gene segments (from top to bottom) in each virus are PB2, PB1, PA, HA, NP, NA, M, and NS. Each colour represents a separate source background. This illustration is based on the nucleotide distance comparison and phylogenetic analysis
Molecular analysis of influenza A subtype H1 viruses from wild birds in Anhui Province
| Virus stain | PB2 | PB1 | PB1-F2 | PA | HA | NA | M1 | M2 | NS | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 271 T | 627E | 701 K | 436Y | 66 N | 515 T | 190E | 225G | 63-65 Neck deletion | 30 N | 215 T | 31S | 92D | |
| A/ | + | + | + | + | + | + | + | + | - | D | A | + | + |
| A/ | + | + | + | + | + | + | + | + | - | D | A | + | + |
| A/ | + | + | + | + | + | + | + | + | - | D | A | + | + |
| A/ | + | + | + | + | + | + | + | + | - | D | A | + | + |
| A/ | + | + | + | + | + | + | + | + | - | D | A | + | + |
| A/ | + | + | + | + | + | + | + | + | - | D | A | + | + |
| A/ | + | + | + | + | + | + | + | + | - | D | A | + | + |
Fig. 5Change in body weight and mortality in BALB/c mice inoculated with H1 viruses. a Body weights and survival rates of mice were observed over 14 days after infection. b Lungs and tracheas were collected at 3 days post infection (p.i.); the virus replication levels were measured by EID50 in specific-pathogen-free (SPF) eggs