Literature DB >> 28667112

Molybdenum-Based Diazotrophy in a Sphagnum Peatland in Northern Minnesota.

Melissa J Warren1, Xueju Lin2, John C Gaby2, Cecilia B Kretz1, Max Kolton2, Peter L Morton3, Jennifer Pett-Ridge4, David J Weston5, Christopher W Schadt5, Joel E Kostka1,2, Jennifer B Glass6,2.   

Abstract

Microbial N2 fixation (diazotrophy) represents an important nitrogen source to oligotrophic peatland ecosystems, which are important sinks for atmospheric CO2 and are susceptible to the changing climate. The objectives of this study were (i) to determine the active microbial group and type of nitrogenase mediating diazotrophy in an ombrotrophic Sphagnum-dominated peat bog (the S1 peat bog, Marcell Experimental Forest, Minnesota, USA); and (ii) to determine the effect of environmental parameters (light, O2, CO2, and CH4) on potential rates of diazotrophy measured by acetylene (C2H2) reduction and 15N2 incorporation. A molecular analysis of metabolically active microbial communities suggested that diazotrophy in surface peat was primarily mediated by Alphaproteobacteria (Bradyrhizobiaceae and Beijerinckiaceae). Despite higher concentrations of dissolved vanadium ([V] 11 nM) than molybdenum ([Mo] 3 nM) in surface peat, a combination of metagenomic, amplicon sequencing, and activity measurements indicated that Mo-containing nitrogenases dominate over the V-containing form. Acetylene reduction was only detected in surface peat exposed to light, with the highest rates observed in peat collected from hollows with the highest water contents. Incorporation of 15N2 was suppressed 90% by O2 and 55% by C2H2 and was unaffected by CH4 and CO2 amendments. These results suggest that peatland diazotrophy is mediated by a combination of C2H2-sensitive and C2H2-insensitive microbes that are more active at low concentrations of O2 and show similar activity at high and low concentrations of CH4 IMPORTANCE Previous studies indicate that diazotrophy provides an important nitrogen source and is linked to methanotrophy in Sphagnum-dominated peatlands. However, the environmental controls and enzymatic pathways of peatland diazotrophy, as well as the metabolically active microbial populations that catalyze this process, remain in question. Our findings indicate that oxygen levels and photosynthetic activity override low nutrient availability in limiting diazotrophy and that members of the Alphaproteobacteria (Rhizobiales) catalyze this process at the bog surface using the molybdenum-based form of the nitrogenase enzyme.
Copyright © 2017 American Society for Microbiology.

Entities:  

Keywords:  Alphaproteobacteria; Sphagnum; acetylene; diazotrophy; methanotrophs; molybdenum; nitrogen cycle enzymes; nitrogen fixation; peatland; vanadium

Year:  2017        PMID: 28667112      PMCID: PMC5561275          DOI: 10.1128/AEM.01174-17

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  63 in total

1.  Revealing the uncultivated majority: combining DNA stable-isotope probing, multiple displacement amplification and metagenomic analyses of uncultivated Methylocystis in acidic peatlands.

Authors:  Yin Chen; Marc G Dumont; Josh D Neufeld; Levente Bodrossy; Nancy Stralis-Pavese; Niall P McNamara; Nick Ostle; Maria J I Briones; J Colin Murrell
Journal:  Environ Microbiol       Date:  2008-07-10       Impact factor: 5.491

2.  Integrative analysis of environmental sequences using MEGAN4.

Authors:  Daniel H Huson; Suparna Mitra; Hans-Joachim Ruscheweyh; Nico Weber; Stephan C Schuster
Journal:  Genome Res       Date:  2011-06-20       Impact factor: 9.043

Review 3.  Sphagnum physiology in the context of changing climate: emergent influences of genomics, modelling and host-microbiome interactions on understanding ecosystem function.

Authors:  David J Weston; Collin M Timm; Anthony P Walker; Lianhong Gu; Wellington Muchero; Jeremy Schmutz; A Jonathan Shaw; Gerald A Tuskan; Jeffrey M Warren; Stan D Wullschleger
Journal:  Plant Cell Environ       Date:  2014-12-07       Impact factor: 7.228

4.  Oxygen requirement for acetylene reduction by pure cultures of rhizobia.

Authors:  D L Keister; W R Evans
Journal:  J Bacteriol       Date:  1976-07       Impact factor: 3.490

5.  Isolation of nitrogen-fixing bacteria containing molybdenum-independent nitrogenases from natural environments.

Authors:  T M Loveless; J R Saah; P E Bishop
Journal:  Appl Environ Microbiol       Date:  1999-09       Impact factor: 4.792

6.  Investigations of the structure and function of bacterial communities associated with Sphagnum mosses.

Authors:  Katja Opelt; Vladimir Chobot; Franz Hadacek; Susan Schönmann; Leo Eberl; Gabriele Berg
Journal:  Environ Microbiol       Date:  2007-11       Impact factor: 5.491

7.  Diversity of the active methanotrophic community in acidic peatlands as assessed by mRNA and SIP-PLFA analyses.

Authors:  Yin Chen; Marc G Dumont; Niall P McNamara; Paul M Chamberlain; Levente Bodrossy; Nancy Stralis-Pavese; J Colin Murrell
Journal:  Environ Microbiol       Date:  2007-12-17       Impact factor: 5.491

8.  Molybdenum limitation of microbial nitrogen assimilation in aquatic ecosystems and pure cultures.

Authors:  Jennifer B Glass; Richard P Axler; Sudeep Chandra; Charles R Goldman
Journal:  Front Microbiol       Date:  2012-09-13       Impact factor: 5.640

9.  Diversity and Activity of Alternative Nitrogenases in Sequenced Genomes and Coastal Environments.

Authors:  Darcy L McRose; Xinning Zhang; Anne M L Kraepiel; François M M Morel
Journal:  Front Microbiol       Date:  2017-02-28       Impact factor: 5.640

10.  Genome analysis coupled with physiological studies reveals a diverse nitrogen metabolism in Methylocystis sp. strain SC2.

Authors:  Bomba Dam; Somasri Dam; Jochen Blom; Werner Liesack
Journal:  PLoS One       Date:  2013-10-10       Impact factor: 3.240

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  8 in total

1.  Diazotroph Community Characterization via a High-Throughput nifH Amplicon Sequencing and Analysis Pipeline.

Authors:  John Christian Gaby; Lavanya Rishishwar; Lina C Valderrama-Aguirre; Stefan J Green; Augusto Valderrama-Aguirre; I King Jordan; Joel E Kostka
Journal:  Appl Environ Microbiol       Date:  2018-01-31       Impact factor: 4.792

2.  Relationship Between Peat Type and Microbial Ecology in Sphagnum-Containing Peatlands of the Adirondack Mountains, NY, USA.

Authors:  Andrew R St James; Janni Lin; Ruth E Richardson
Journal:  Microb Ecol       Date:  2021-01-07       Impact factor: 4.552

3.  Diversity of Active Viral Infections within the Sphagnum Microbiome.

Authors:  Joshua M A Stough; Max Kolton; Joel E Kostka; David J Weston; Dale A Pelletier; Steven W Wilhelm
Journal:  Appl Environ Microbiol       Date:  2018-11-15       Impact factor: 4.792

4.  The influence of oxygen and methane on nitrogen fixation in subarctic Sphagnum mosses.

Authors:  Martine A R Kox; Sanni L Aalto; Timo Penttilä; Katharina F Ettwig; Mike S M Jetten; Maartje A H J van Kessel
Journal:  AMB Express       Date:  2018-05-05       Impact factor: 3.298

Review 5.  Molecular Analyses of the Distribution and Function of Diazotrophic Rhizobia and Methanotrophs in the Tissues and Rhizosphere of Non-Leguminous Plants.

Authors:  Tadakatsu Yoneyama; Junko Terakado-Tonooka; Zhihua Bao; Kiwamu Minamisawa
Journal:  Plants (Basel)       Date:  2019-10-11

6.  Succession of microbial populations and nitrogen-fixation associated with the biodegradation of sediment-oil-agglomerates buried in a Florida sandy beach.

Authors:  Boryoung Shin; Ioana Bociu; Max Kolton; Markus Huettel; Joel E Kostka
Journal:  Sci Rep       Date:  2019-12-18       Impact factor: 4.379

7.  Experimental warming alters the community composition, diversity, and N2 fixation activity of peat moss (Sphagnum fallax) microbiomes.

Authors:  Alyssa A Carrell; Max Kolton; Jennifer B Glass; Dale A Pelletier; Melissa J Warren; Joel E Kostka; Colleen M Iversen; Paul J Hanson; David J Weston
Journal:  Glob Chang Biol       Date:  2019-07-02       Impact factor: 10.863

8.  Minnesota peat viromes reveal terrestrial and aquatic niche partitioning for local and global viral populations.

Authors:  Anneliek M Ter Horst; Christian Santos-Medellín; Jackson W Sorensen; Laura A Zinke; Rachel M Wilson; Eric R Johnston; Gareth Trubl; Jennifer Pett-Ridge; Steven J Blazewicz; Paul J Hanson; Jeffrey P Chanton; Christopher W Schadt; Joel E Kostka; Joanne B Emerson
Journal:  Microbiome       Date:  2021-11-26       Impact factor: 14.650

  8 in total

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