Literature DB >> 28665664

Conformational Properties of a Back-Folding Wormlike Chain Confined in a Cylindrical Tube.

Jeff Z Y Chen1.   

Abstract

When a semiflexible chain is confined in a narrow cylindrical tube, the formation of a polymer hairpin is a geometrical conformation that accompanies an exponentially large local free energy and, hence, is a relatively rare event. Numerical solutions of the hairpin distribution functions for persistence-length-to-tube-radius ratios over a wide range are obtained in high precision, by using the Green's function approach for the wormlike-chain model. The crossover region between the narrow and moderately narrow tubes is critically investigated in terms of the hairpin free energy, global persistence length, mean hairpin-tip distance from the tube axis, and hairpin-plane orientational properties. Accurate representations of the solutions by simple interpolation formulae are suggested.

Year:  2017        PMID: 28665664     DOI: 10.1103/PhysRevLett.118.247802

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  6 in total

1.  Distribution of label spacings for genome mapping in nanochannels.

Authors:  D Ödman; E Werner; K D Dorfman; C R Doering; B Mehlig
Journal:  Biomicrofluidics       Date:  2018-06-25       Impact factor: 2.800

2.  Hairpins in the conformations of a confined polymer.

Authors:  E Werner; A Jain; A Muralidhar; K Frykholm; T St Clere Smithe; J Fritzsche; F Westerlund; K D Dorfman; B Mehlig
Journal:  Biomicrofluidics       Date:  2018-03-09       Impact factor: 2.800

3.  Extension distribution for DNA confined in a nanochannel near the Odijk regime.

Authors:  Hui-Min Chuang; Jeffrey G Reifenberger; Aditya Bikram Bhandari; Kevin D Dorfman
Journal:  J Chem Phys       Date:  2019-09-21       Impact factor: 3.488

4.  Limitations of the equivalent neutral polymer assumption for theories describing nanochannel-confined DNA.

Authors:  Aditya Bikram Bhandari; Kevin D Dorfman
Journal:  Phys Rev E       Date:  2020-01       Impact factor: 2.529

5.  The Statistical Segment Length of DNA: Opportunities for Biomechanical Modeling in Polymer Physics and Next-Generation Genomics.

Authors:  Kevin D Dorfman
Journal:  J Biomech Eng       Date:  2018-02-01       Impact factor: 2.097

6.  Odijk excluded volume interactions during the unfolding of DNA confined in a nanochannel.

Authors:  Jeffrey G Reifenberger; Han Cao; Kevin D Dorfman
Journal:  Macromolecules       Date:  2018-01-24       Impact factor: 5.985

  6 in total

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