Literature DB >> 28661893

Exact lower and upper bounds on stationary moments in stochastic biochemical systems.

Khem Raj Ghusinga1, Cesar A Vargas-Garcia, Andrew Lamperski, Abhyudai Singh.   

Abstract

In the stochastic description of biochemical reaction systems, the time evolution of statistical moments for species population counts is described by a linear dynamical system. However, except for some ideal cases (such as zero- and first-order reaction kinetics), the moment dynamics is underdetermined as lower-order moments depend upon higher-order moments. Here, we propose a novel method to find exact lower and upper bounds on stationary moments for a given arbitrary system of biochemical reactions. The method exploits the fact that statistical moments of any positive-valued random variable must satisfy some constraints that are compactly represented through the positive semidefiniteness of moment matrices. Our analysis shows that solving moment equations at steady state in conjunction with constraints on moment matrices provides exact lower and upper bounds on the moments. These results are illustrated by three different examples-the commonly used logistic growth model, stochastic gene expression with auto-regulation and an activator-repressor gene network motif. Interestingly, in all cases the accuracy of the bounds is shown to improve as moment equations are expanded to include higher-order moments. Our results provide avenues for development of approximation methods that provide explicit bounds on moments for nonlinear stochastic systems that are otherwise analytically intractable.

Mesh:

Year:  2017        PMID: 28661893     DOI: 10.1088/1478-3975/aa75c6

Source DB:  PubMed          Journal:  Phys Biol        ISSN: 1478-3967            Impact factor:   2.583


  4 in total

1.  Optimization-based synthesis of stochastic biocircuits with statistical specifications.

Authors:  Yuta Sakurai; Yutaka Hori
Journal:  J R Soc Interface       Date:  2018-01       Impact factor: 4.118

2.  Molecular switch architecture determines response properties of signaling pathways.

Authors:  Khem Raj Ghusinga; Roger D Jones; Alan M Jones; Timothy C Elston
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-16       Impact factor: 12.779

3.  Enhancement of gene expression noise from transcription factor binding to genomic decoy sites.

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Journal:  Sci Rep       Date:  2020-06-04       Impact factor: 4.379

4.  Stochastic dynamics of predator-prey interactions.

Authors:  Abhyudai Singh
Journal:  PLoS One       Date:  2021-08-12       Impact factor: 3.240

  4 in total

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