Literature DB >> 28661496

Response to "Mass spectrometrists should search for all peptides, but assess only the ones they care about".

William Stafford Noble1,2, Uri Keich3.   

Abstract

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Year:  2017        PMID： 28661496      PMCID： PMC5740876          DOI： 10.1038/nmeth.4339

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  5 in total

1.  Improving software performance for peptide electron transfer dissociation data analysis by implementation of charge state- and sequence-dependent scoring.

Authors:  Peter R Baker; Katalin F Medzihradszky; Robert J Chalkley
Journal:  Mol Cell Proteomics       Date:  2010-05-31       Impact factor: 5.911

2.  Transferred subgroup false discovery rate for rare post-translational modifications detected by mass spectrometry.

Authors:  Yan Fu; Xiaohong Qian
Journal:  Mol Cell Proteomics       Date:  2013-11-07       Impact factor: 5.911

3.  Proteogenomic strategies for identification of aberrant cancer peptides using large-scale next-generation sequencing data.

Authors:  Sunghee Woo; Seong Won Cha; Seungjin Na; Clark Guest; Tao Liu; Richard D Smith; Karin D Rodland; Samuel Payne; Vineet Bafna
Journal:  Proteomics       Date:  2014-11-17       Impact factor: 3.984

4.  Carbonic anhydrases, EPF2 and a novel protease mediate CO2 control of stomatal development.

Authors:  Cawas B Engineer; Majid Ghassemian; Jeffrey C Anderson; Scott C Peck; Honghong Hu; Julian I Schroeder
Journal:  Nature       Date:  2014-07-06       Impact factor: 49.962

5.  The standard protein mix database: a diverse data set to assist in the production of improved Peptide and protein identification software tools.

Authors:  John Klimek; James S Eddes; Laura Hohmann; Jennifer Jackson; Amelia Peterson; Simon Letarte; Philip R Gafken; Jonathan E Katz; Parag Mallick; Hookeun Lee; Alexander Schmidt; Reto Ossola; Jimmy K Eng; Ruedi Aebersold; Daniel B Martin
Journal:  J Proteome Res       Date:  2007-08-21       Impact factor: 4.466
  5 in total
  2 in total

1.  Accurately Assigning Peptides to Spectra When Only a Subset of Peptides Are Relevant.

Authors:  Andy Lin; Deanna L Plubell; Uri Keich; William S Noble
Journal:  J Proteome Res       Date:  2021-07-08       Impact factor: 5.370

2.  Proteins involved in embryo-maternal interaction around the signalling of maternal recognition of pregnancy in the horse.

Authors:  Katrien Smits; Sander Willems; Katleen Van Steendam; Margot Van De Velde; Valérie De Lange; Cyrillus Ververs; Kim Roels; Jan Govaere; Filip Van Nieuwerburgh; Luc Peelman; Dieter Deforce; Ann Van Soom
Journal:  Sci Rep       Date:  2018-03-27       Impact factor: 4.379
  2 in total

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